Hg_chrom8_TN10mRNA_16170
Organism: Heterodera glycines Gene Locus: chr8:7380659-7381960 Feature type: polypeptideProtein Sequence
Length: 290
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.484 | 0.561 | 0.878 | 1.308 | 1.149 | 0.707 | 0.903 | 1.724 | 1.379 | 1.212 | 0.731 | 1.826 | 1.054 | 0.796 | 1.056 | 0.837 | 0.509 | 1.097 | 1.326 | 0.406 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15280
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
RRAIGADQIAVVTDIKKKH
|
6-26
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.639
|
0.471
|
0.040
|
0.502
|
0.070
|
0.097
|
0.198
|
0.221
|
0.028
|
0.236
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012285
|
1.000
|
1.000
|
Hsc_gene_3724.t1
|
Hsc_gene_3720.t1;Hsc_gene_3724.t1
|
— |
P72966.1 Photosystem I biogenesis protein BtpA [Synechocystis sp. PCC 6803 substr. Kazusa]
|
EPB77633.1 membrane complex biogenesis protein, BtpA family [Ancylostoma ceylanicum]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR005137+16-267_22-242+|IPR011060+22-237+
|
— |
PF03437+22-242+BtpA_family
|
— |
PTHR21381+16-267+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-290
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.499
|
31563.500
|
6.487
|
0.000
|
25.172
|
10.345
|
39.310
|
60.690
|
13.448
|
11.724
|
51.724
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
purple
|
234.320
|
54.165
|
64.145
|
418.977
|
637.432
|
295.446
|
381.279
|
98.504
|
22.434
|
277.094
|
167.954
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.816
|
2.814
|
0.574
|
-1.095
|
0.380
|
-1.692
|
2.097
|
-3.773
|
4.423
|
— | — | — |
No JSON data available for plots.