Hg_chrom8_TN10mRNA_16171
Organism: Heterodera glycines Gene Locus: chr8:7384329-7388714 Feature type: polypeptideProtein Sequence
Length: 661
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.548 | 0.88 | 1.018 | 0.678 | 0.782 | 0.853 | 0.864 | 1.059 | 1.177 | 1.145 | 0.802 | 1.157 | 1.051 | 0.844 | 0.957 | 1.037 | 0.843 | 1.238 | 0.465 | 0.845 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15281
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
10-35
|
0.989
|
12-42
|
0.986
|
— | — |
0.000
|
— | — |
0.147
|
0.726
|
0.299
|
0.460
|
0.030
|
0.128
|
0.169
|
0.146
|
0.069
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004825
|
2.000
|
1.000
|
Hsc_gene_3725.t1
|
Hsc_gene_3725.t1
|
— |
Q9D4D4.1 Transketolase-like protein 2 [Mus musculus]
|
KAH7730201.1 Transketolase-like protein 2 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824
|
GO:0005575_0.841|GO:0110165_0.823|GO:0005622_0.712|GO:0005737_0.707|GO:0008150_0.692|GO:0003674_0.643|GO:0009987_0.610|GO:0008152_0.565|GO:0003824_0.538|GO:0044238_0.526|GO:0044237_0.525|GO:0016020_0.503
|
IPR005474+53-331_57-309+|IPR005475+355-518_356-520+|IPR009014+528-659_531-661+|IPR020826+463-479+|IPR029061+36-331_347-522+|IPR033248+534-653+|IPR049557+60-80+|IPR051424+47-660+
|
SM00861+356-520+
|
PF00456+53-331+Transketolase,_thiamine_diphosphate_binding_domain|PF02779+355-518+Transketolase,_pyrimidine_binding_domain|PF02780+534-653+Transketolase,_C-terminal_domain
|
G3DSA:3.40.50.970:FF:000129+352-530+Transketolase
|
PTHR43195+47-660+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-661
|
6yak_CCC
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.692
|
70846.950
|
7.108
|
5.000
|
22.390
|
9.380
|
41.906
|
58.094
|
12.103
|
10.287
|
56.884
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
8290.404
|
3481.688
|
3266.546
|
14970.465
|
38938.991
|
15535.342
|
13116.154
|
2010.436
|
769.501
|
1448.532
|
1157.519
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.321
|
1.967
|
2.304
|
1.347
|
-1.312
|
-0.234
|
-3.057
|
2.849
|
— |
4.448
|
4.584
|
— | — |
No JSON data available for plots.