Hg_chrom8_TN10mRNA_16172
Organism: Heterodera glycines Gene Locus: chr8:7384487-7388714 Feature type: polypeptideProtein Sequence
Length: 621
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.61 | 0.861 | 1.054 | 0.666 | 0.832 | 0.908 | 0.92 | 0.966 | 1.145 | 1.153 | 0.756 | 1.137 | 0.85 | 0.836 | 0.92 | 1.012 | 0.792 | 1.269 | 0.495 | 0.9 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15281
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.538
|
0.204
|
0.052
|
0.691
|
0.122
|
0.193
|
0.121
|
0.113
|
0.118
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004825
|
2.000
|
1.000
|
Hsc_gene_3725.t1
|
Hsc_gene_3725.t1
|
— |
Q9D4D4.1 Transketolase-like protein 2 [Mus musculus]
|
KAH7730201.1 Transketolase-like protein 2 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824
|
GO:0005575_0.837|GO:0110165_0.821|GO:0005622_0.710|GO:0005737_0.707|GO:0008150_0.691|GO:0003674_0.643|GO:0009987_0.608|GO:0008152_0.566|GO:0003824_0.540|GO:0044238_0.527|GO:0044237_0.525|GO:0016020_0.501
|
IPR005474+13-291_17-269+|IPR005475+315-478_316-480+|IPR009014+488-619_491-621+|IPR020826+423-439+|IPR029061+5-291_307-482+|IPR033248+494-613+|IPR049557+20-40+|IPR051424+8-620+
|
SM00861+316-480+
|
PF00456+13-291+Transketolase,_thiamine_diphosphate_binding_domain|PF02779+315-478+Transketolase,_pyrimidine_binding_domain|PF02780+494-613+Transketolase,_C-terminal_domain
|
G3DSA:3.40.50.970:FF:000129+312-490+Transketolase
|
PTHR43195+8-620+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-621
|
6yak_CCC
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.633
|
66164.370
|
6.242
|
-2.000
|
22.222
|
8.696
|
41.385
|
58.615
|
11.433
|
10.789
|
57.649
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
8290.404
|
3481.688
|
3266.546
|
14970.465
|
38938.991
|
15535.342
|
13116.154
|
2010.436
|
769.501
|
1448.532
|
1157.519
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.321
|
1.967
|
2.304
|
1.347
|
-1.312
|
-0.234
|
-3.057
|
2.849
|
— |
4.448
|
4.584
|
— | — |
No JSON data available for plots.