Hg_chrom8_TN10mRNA_16173
Organism: Heterodera glycines Gene Locus: chr8:7388761-7398917 Feature type: polypeptideProtein Sequence
Length: 801
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.755 | 0.813 | 1.135 | 1.119 | 1.103 | 0.992 | 0.758 | 1.498 | 0.916 | 1.198 | 0.832 | 1.248 | 1.214 | 1.104 | 1.019 | 0.999 | 0.819 | 1.078 | 2.017 | 0.955 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15282
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.474
|
0.321
|
0.006
|
0.616
|
0.191
|
0.476
|
0.139
|
0.091
|
0.215
|
0.084
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004722
|
2.000
|
1.000
|
Hsc_gene_3101.t1
|
— | — |
Q8R146.3 Acylamino-acid-releasing enzyme [Mus musculus]
|
KAH7730616.1 CRE-DPF-5 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008236
|
GO:0008150_0.921|GO:0003674_0.821|GO:0005575_0.817|GO:0110165_0.817|GO:0009987_0.743|GO:0008152_0.741|GO:0003824_0.707|GO:0016787_0.640|GO:0044238_0.626|GO:0140096_0.626|GO:0005622_0.612|GO:0008233_0.603|GO:0043170_0.599|GO:0016020_0.589|GO:0019538_0.569|GO:0005737_0.555|GO:0043226_0.553|GO:0005488_0.552|GO:0043229_0.527|GO:0043227_0.505
|
IPR001375+566-787+|IPR029058+488-789_538-787+|IPR045550+137-277+
|
— |
PF00326+566-787+Prolyl_oligopeptidase_family|PF19283+137-277+Acylamino-acid-releasing_enzyme,_N-terminal_domain
|
— |
PTHR42776+13-787+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
796-801
|
1.000
|
1-795
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.544
|
90590.020
|
6.014
|
-7.000
|
26.342
|
13.233
|
45.693
|
54.307
|
13.483
|
12.859
|
50.687
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
2626.447
|
5204.935
|
2554.997
|
3234.521
|
3283.433
|
2664.799
|
2625.504
|
2243.360
|
837.782
|
2683.039
|
1892.215
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.256
|
-0.824
|
0.449
|
— |
-0.286
|
— |
-0.354
|
0.370
|
-1.797
|
2.109
|
— | — | — |
No JSON data available for plots.