Hg_chrom8_TN10mRNA_16174
Organism: Heterodera glycines Gene Locus: chr8:7402436-7403359 Feature type: polypeptideProtein Sequence
Length: 169
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.688 | 0.688 | 1.183 | 0.816 | 1.183 | 1.669 | 0.634 | 0.592 | 1.183 | 1.359 | 1.166 | 0.696 | 1.151 | 1.707 | 1.208 | 0.676 | 0.679 | 0.628 | 1.821 | 1.044 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15283
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RKAWRKDHPFGFIARQCKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.500
|
0.268
|
0.014
|
0.703
|
0.284
|
0.149
|
0.288
|
0.024
|
0.176
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012286
|
1.000
|
1.000
|
Hsc_gene_3727.t1
|
Hsc_gene_3727.t1
|
— |
Q95017.1 SUMO-conjugating enzyme UBC9 [Caenorhabditis elegans]
|
KAF7639295.1 UBIQUITIN_CONJUGAT_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.882|GO:0003674_0.766|GO:0008152_0.701|GO:0009987_0.691|GO:0005575_0.689|GO:0043170_0.686|GO:0044238_0.683|GO:0110165_0.668|GO:0019538_0.654|GO:0005622_0.623|GO:0043226_0.558|GO:0043229_0.551|GO:0016020_0.549|GO:0003824_0.545|GO:0016740_0.530|GO:0140096_0.527|GO:0016746_0.519|GO:0016755_0.516|GO:0019787_0.516|GO:0005737_0.513|GO:0043227_0.505
|
IPR000608+4-157_8-151_8-152+|IPR016135+1-167_3-155+|IPR023313+82-97+|IPR050113+3-154+
|
SM00212+7-157+
|
PF00179+8-151+Ubiquitin-conjugating_enzyme
|
G3DSA:3.10.110.10:FF:000035+1-157+SUMO-conjugating_enzyme_ubc9
|
PTHR24067+3-154+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-169
|
4l83_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.685
|
19466.280
|
7.084
|
1.000
|
28.402
|
11.243
|
46.746
|
53.254
|
14.793
|
13.609
|
44.970
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey60
|
1891.227
|
1414.089
|
1603.475
|
2157.937
|
2257.522
|
1809.182
|
2617.107
|
1899.893
|
1454.103
|
2023.840
|
1779.667
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.473
|
0.538
|
— |
-0.305
|
0.543
|
— |
0.605
|
— | — | — | — | — |
No JSON data available for plots.