Hg_chrom8_TN10mRNA_16181
Organism: Heterodera glycines Gene Locus: chr8:7422564-7423784 Feature type: polypeptideProtein Sequence
Length: 291
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.759 | 1.359 | 1.187 | 0.592 | 1.718 | 1.145 | 0.164 | 0.859 | 1.604 | 1.3 | 1.51 | 1.819 | 1.432 | 0.925 | 0.982 | 1.031 | 0.338 | 0.625 | 0.793 | 0.707 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15290
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.850
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKAYPSPEFAGSEHFRRKS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.833
|
0.138
|
0.020
|
0.305
|
0.119
|
0.127
|
0.140
|
0.102
|
0.062
|
0.177
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000512
|
7.000
|
0.000
|
0.000
|
— | — | — |
KAF7635668.1 Dimer_Tnp_hAT domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.914|GO:0110165_0.913|GO:0005622_0.890|GO:0016020_0.844|GO:0043226_0.831|GO:0043229_0.826|GO:0003674_0.819|GO:0005737_0.810|GO:0043227_0.793|GO:0005488_0.785|GO:0043231_0.771|GO:0005515_0.756|GO:0005634_0.689|GO:0042802_0.670|GO:0031974_0.588|GO:0031981_0.588|GO:0043233_0.588|GO:0070013_0.588|GO:0005654_0.564
|
IPR012337+74-265+|IPR052035+77-270+
|
— | — | — |
PTHR46481+77-270+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-291
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.557
|
33985.970
|
5.535
|
-3.500
|
33.333
|
10.309
|
52.921
|
47.079
|
16.495
|
16.838
|
40.206
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
269.912
|
286.169
|
387.837
|
289.263
|
282.474
|
314.462
|
99.520
|
391.333
|
179.703
|
276.942
|
235.268
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.209
|
— |
-0.315
|
— | — |
-1.653
|
— |
-1.837
|
— | — | — | — | — |
No JSON data available for plots.