Hg_chrom8_TN10mRNA_16182
Organism: Heterodera glycines Gene Locus: chr8:7426029-7428380 Feature type: polypeptideProtein Sequence
Length: 387
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.142 | 0.721 | 0.893 | 1.069 | 0.301 | 1.193 | 0.861 | 1.68 | 0.919 | 1.292 | 0.822 | 1.064 | 1.579 | 1.044 | 1.002 | 0.997 | 0.805 | 1.175 | 2.982 | 0.456 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15291
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.920
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — |
14-39
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.143
|
0.321
|
0.046
|
0.268
|
0.631
|
0.079
|
0.200
|
0.019
|
0.096
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002513
|
3.000
|
1.000
|
Hsc_gene_3732.t1
|
Hsc_gene_3732.t1;Hsc_gene_3737.t1;Hsc_gene_3737.t2
|
— |
P17330.1 Glyceraldehyde-3-phosphate dehydrogenase 3 [Caenorhabditis elegans]
|
KAI1712013.1 glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629|GO:0016620
|
GO:0005575_0.846|GO:0008150_0.795|GO:0110165_0.771|GO:0003674_0.728|GO:0005622_0.613|GO:0009987_0.603|GO:0005737_0.596|GO:0016020_0.591|GO:0003824_0.552|GO:0008152_0.539|GO:0044238_0.511
|
IPR005804+69-203+|IPR020829+233-366+|IPR020831+233-385+
|
— |
PF00487+69-203+Fatty_acid_desaturase|PF02800+233-366+Glyceraldehyde_3-phosphate_dehydrogenase,_C-terminal_domain
|
G3DSA:3.30.360.10:FF:000001+231-368+Glyceraldehyde-3-phosphate_dehydrogenase
|
PTHR10836+233-385+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-387
|
4o63_O
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.837
|
42973.740
|
9.483
|
20.500
|
20.413
|
14.470
|
40.052
|
59.948
|
13.695
|
6.718
|
53.230
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
2139.293
|
143.199
|
137.943
|
177.755
|
423.724
|
242.243
|
1273.159
|
497.932
|
410.308
|
7965.691
|
4727.670
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.284
|
— |
0.475
|
1.221
|
-0.792
|
2.406
|
0.935
|
1.498
|
-4.382
|
— |
-3.902
|
— | — |
No JSON data available for plots.