Hg_chrom8_TN10mRNA_16185
Organism: Heterodera glycines Gene Locus: chr8:7430979-7435731 Feature type: polypeptideProtein Sequence
Length: 488
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.12 | 0.905 | 0.969 | 0.636 | 0.751 | 1.051 | 0.781 | 2.561 | 0.774 | 1.523 | 0.59 | 1.446 | 1.708 | 0.749 | 1.255 | 0.732 | 0.672 | 0.962 | 2.364 | 0.904 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15293
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.669
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
50-70
|
0.954
|
— | — | — | — |
0.000
|
— | — |
0.099
|
0.316
|
0.040
|
0.171
|
0.886
|
0.234
|
0.482
|
0.018
|
0.120
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002517
|
2.000
|
2.000
|
Hsc_gene_3737.t1;Hsc_gene_3737.t2
|
Hsc_gene_3735.t1;Hsc_gene_3737.t1;Hsc_gene_3737.t2
|
— |
G5EG11.1 Delta(5) fatty acid desaturase fat-4 [Caenorhabditis elegans]
|
KAH7729624.1 FAT-4 protein [Aphelenchus avenae]
|
No
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629|GO:0016491
|
GO:0003674_0.887|GO:0008150_0.865|GO:0003824_0.806|GO:0009987_0.799|GO:0008152_0.720|GO:0044238_0.690|GO:0016491_0.681|GO:0044237_0.678|GO:0009058_0.670|GO:0016705_0.647|GO:0044249_0.644|GO:0006629_0.616|GO:0008610_0.608|GO:0044255_0.605|GO:0005575_0.601|GO:0110165_0.601|GO:0016717_0.585|GO:0044281_0.535|GO:0016020_0.526|GO:0006082_0.502|GO:0019752_0.502|GO:0043436_0.502
|
IPR005804+191-453+|IPR012171+7-484_18-474+
|
— |
PF00487+191-453+Fatty_acid_desaturase
|
— |
PTHR19353+18-474+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-10;59-110;487-488
|
2.000
|
11-58;111-486
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.614
|
55720.830
|
7.791
|
13.500
|
25.000
|
17.418
|
42.213
|
57.787
|
15.164
|
9.836
|
46.721
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
steelblue
|
1305.219
|
241.957
|
1148.612
|
2172.873
|
2255.985
|
1781.838
|
3204.249
|
829.963
|
903.514
|
669.395
|
769.732
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.019
|
3.030
|
1.028
|
— |
-0.326
|
0.857
|
-1.203
|
2.090
|
— | — | — | — | — |
No JSON data available for plots.