Hg_chrom8_TN10mRNA_16186
Organism: Heterodera glycines Gene Locus: chr8:7436872-7438250 Feature type: polypeptideProtein Sequence
Length: 131
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.243 | 0.71 | 0.694 | 1.053 | 1.399 | 0.391 | 0.727 | 2.29 | 0.848 | 1.135 | 0.578 | 1.796 | 1.484 | 0.734 | 0.623 | 1.745 | 0.751 | 1.041 | 0.0 | 1.123 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15294
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.686
|
0.176
|
0.029
|
0.653
|
0.055
|
0.128
|
0.110
|
0.036
|
0.082
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012292
|
1.000
|
1.000
|
Hsc_gene_3738.t1
|
Hsc_gene_3738.t1
|
— |
P83940.1 Elongin-C [Mus musculus]
|
KAH7728499.1 transcription elongation factor B polypeptide 1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006511
|
GO:0005575_0.892|GO:0110165_0.887|GO:0005622_0.795|GO:0008150_0.744|GO:0005737_0.738|GO:0009987_0.676|GO:0016020_0.649|GO:0043226_0.598|GO:0043227_0.588|GO:0008152_0.587|GO:0043229_0.582|GO:0003674_0.579|GO:0043231_0.562|GO:0044238_0.560|GO:0032991_0.554|GO:0043170_0.543|GO:0006139_0.525|GO:0090304_0.512
|
IPR001232+35-131+|IPR011333+35-131_37-131+|IPR016073+38-98+|IPR039948+26-131+
|
SM00512+35-131+
|
PF03931+38-98+Skp1_family,_tetramerisation_domain
|
G3DSA:3.30.710.10:FF:000035+35-131+Elongin_C_transcription_elongation_factor
|
PTHR20648+26-131+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-10
|
1.000
|
11-131
|
9d8p_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.570
|
14238.040
|
5.128
|
-4.000
|
23.664
|
13.740
|
45.038
|
54.962
|
11.450
|
12.214
|
54.198
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1598.754
|
3662.751
|
2164.867
|
1051.397
|
876.561
|
898.154
|
1274.094
|
1952.463
|
1889.154
|
1122.577
|
1451.110
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.988
|
-1.938
|
-0.933
|
-0.295
|
— |
0.516
|
1.016
|
-0.472
|
— | — | — | — | — |
No JSON data available for plots.