Hg_chrom8_TN10mRNA_16187
Organism: Heterodera glycines Gene Locus: chr8:7438494-7444077 Feature type: polypeptideProtein Sequence
Length: 664
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.051 | 0.911 | 1.041 | 0.415 | 0.879 | 1.004 | 0.843 | 1.807 | 0.87 | 1.425 | 0.57 | 1.683 | 1.506 | 1.216 | 1.352 | 0.904 | 0.963 | 0.753 | 1.043 | 0.664 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15295
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.648
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
mitochondrion
|
— | — |
3-36
|
0.974
|
— | — | — | — |
0.000
|
— | — |
0.192
|
0.486
|
0.013
|
0.137
|
0.061
|
0.210
|
0.155
|
0.271
|
0.123
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012293
|
1.000
|
1.000
|
Hsc_gene_3740.t1
|
Hsc_gene_3739.t1;Hsc_gene_3740.t1
|
— |
P52826.1 Carnitine O-acetyltransferase [Columba livia]
|
KAI1716363.1 choline/Carnitine o-acyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016746
|
GO:0008150_0.882|GO:0003674_0.744|GO:0005575_0.725|GO:0110165_0.715|GO:0003824_0.652|GO:0005622_0.649|GO:0016020_0.636|GO:0008152_0.626|GO:0005737_0.608|GO:0009987_0.585|GO:0043226_0.574|GO:0043227_0.567|GO:0043229_0.557|GO:0043231_0.529|GO:0016740_0.518
|
IPR000542+46-652+|IPR023213+48-649+|IPR039551+51-643+|IPR042231+108-439+
|
— |
PF00755+51-643+Choline/Carnitine_o-acyltransferase
|
— |
PTHR22589+46-652+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-664
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.705
|
74076.330
|
7.126
|
8.000
|
25.000
|
12.651
|
45.030
|
54.970
|
14.006
|
10.994
|
50.452
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1885.960
|
3113.787
|
2229.796
|
1532.758
|
1593.473
|
1736.882
|
3141.508
|
2346.867
|
625.856
|
1896.031
|
1351.670
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.711
|
-1.160
|
-0.432
|
— | — |
0.865
|
0.329
|
0.563
|
— | — | — | — | — |
No JSON data available for plots.