Hg_chrom8_TN10mRNA_16189
Organism: Heterodera glycines Gene Locus: chr8:7466394-7470513 Feature type: polypeptideProtein Sequence
Length: 807
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 2.075 | 0.749 | 0.586 | 0.385 | 0.496 | 3.622 | 1.136 | 2.478 | 0.606 | 1.038 | 0.131 | 0.729 | 0.482 | 1.311 | 0.48 | 1.257 | 0.934 | 0.601 | 0.381 | 0.182 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15297
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.791
|
0.166
|
0.013
|
0.362
|
0.076
|
0.077
|
0.075
|
0.053
|
0.075
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001433
|
1.000
|
4.000
|
Hsc_gene_3745.t1;Hsc_gene_3745.t2;Hsc_gene_3745.t3;Hsc_gene_3745.t4
|
Hsc_gene_3745.t1;Hsc_gene_3745.t2
|
— | — |
KAI1717772.1 forkhead domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.814|GO:0003674_0.712|GO:0009987_0.695|GO:0032502_0.688|GO:0048856_0.688|GO:0005575_0.681|GO:0110165_0.678|GO:0032501_0.677|GO:0065007_0.665|GO:0007275_0.658|GO:0050789_0.650|GO:0005488_0.640|GO:0050794_0.635|GO:0005515_0.597|GO:0048731_0.587|GO:0005622_0.562|GO:0030154_0.550|GO:0048869_0.550|GO:0048519_0.537|GO:0016020_0.524|GO:0048523_0.523|GO:0043226_0.512
|
IPR032354+272-345+|IPR050998+153-401+
|
— |
PF16159+272-345+FOXP_coiled-coil_domain
|
— |
PTHR45796+153-401+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-120;334-541;619-763
|
3.000
|
121-333;542-618;764-807
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.711
|
82375.280
|
6.329
|
-4.000
|
14.374
|
7.807
|
46.221
|
53.779
|
8.178
|
6.196
|
60.223
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
2106.570
|
16849.940
|
2858.131
|
372.762
|
118.227
|
116.048
|
256.387
|
418.521
|
1767.830
|
19.118
|
768.566
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.791
|
-5.636
|
-2.829
|
-1.687
|
— |
1.153
|
1.750
|
-0.568
|
7.814
|
— | — | — | — |
No JSON data available for plots.