Hg_chrom8_TN10mRNA_16195
Organism: Heterodera glycines Gene Locus: chr8:7483489-7486153 Feature type: polypeptideProtein Sequence
Length: 565
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.617 | 0.988 | 1.062 | 1.038 | 1.091 | 0.953 | 0.864 | 1.239 | 1.18 | 0.957 | 0.939 | 1.249 | 1.524 | 0.851 | 1.662 | 1.011 | 0.551 | 1.046 | 1.498 | 1.041 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15301
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-16
|
0.968
|
1.000
|
0.000
|
0.000
|
0.192
|
0.210
|
0.188
|
0.304
|
0.183
|
0.238
|
0.271
|
0.085
|
0.199
|
0.431
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004827
|
3.000
|
0.000
|
0.000
|
— | — |
P56202.2 Cathepsin W [Homo sapiens]
|
KAF7636296.1 Pept_C1 domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008234
|
GO:0005575_0.767|GO:0110165_0.762|GO:0008150_0.725|GO:0003674_0.628|GO:0005622_0.607|GO:0016020_0.575|GO:0005737_0.533|GO:0043226_0.514
|
IPR000668+294-561_297-555+|IPR013128+50-547+|IPR038765+288-554+
|
SM00645+294-561+
|
PF00112+297-555+Papain_family_cysteine_protease
|
— |
PTHR12411+50-547+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-565
|
6rni_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.824
|
64906.020
|
8.589
|
18.000
|
29.204
|
13.451
|
47.611
|
52.389
|
16.814
|
12.389
|
47.434
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
2772.103
|
1471.894
|
1933.321
|
1747.917
|
1847.476
|
2369.580
|
1203.706
|
2651.531
|
8472.700
|
813.891
|
4096.238
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.165
|
0.111
|
— | — |
0.374
|
-0.968
|
— |
-0.998
|
3.279
|
— | — | — | — |