Hg_chrom8_TN10mRNA_16196
Organism: Heterodera glycines Gene Locus: chr8:7487292-7488317 Feature type: polypeptideProtein Sequence
Length: 121
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.441 | 0.577 | 0.751 | 0.57 | 0.964 | 1.907 | 1.181 | 3.719 | 1.286 | 1.452 | 0.626 | 1.945 | 0.23 | 0.477 | 0.843 | 0.945 | 0.406 | 0.751 | 1.271 | 0.486 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15302
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.617
|
0.444
|
0.135
|
0.592
|
0.132
|
0.079
|
0.080
|
0.059
|
0.029
|
0.289
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012297
|
1.000
|
1.000
|
Hsc_gene_3750.t1
|
Hsc_gene_3750.t1
|
— |
O76387.1 Probable peptidyl-tRNA hydrolase 2 [Caenorhabditis elegans]
|
KAK6038792.1 aminoacyl-tRNA hydrolase [Cooperia oncophora]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004045
|
GO:0005575_0.895|GO:0110165_0.872|GO:0005622_0.812|GO:0005737_0.771|GO:0016020_0.753|GO:0043226_0.737|GO:0043229_0.722|GO:0043227_0.703|GO:0043231_0.690|GO:0005739_0.567|GO:0008150_0.564
|
IPR002833+16-119_17-119+|IPR023476+10-120_16-120+
|
— |
PF01981+16-119+Peptidyl-tRNA_hydrolase_PTH2
|
G3DSA:3.40.1490.10:FF:000002+10-120+Peptidyl-tRNA_hydrolase_2,_mitochondrial
|
PTHR12649+17-119+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
119-121
|
1.000
|
1-118
|
2d3k_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.555
|
13125.910
|
6.971
|
2.500
|
25.620
|
11.570
|
44.628
|
55.372
|
15.702
|
9.917
|
47.107
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
605.507
|
211.966
|
371.797
|
390.949
|
479.722
|
401.860
|
524.379
|
285.269
|
771.505
|
1070.738
|
942.495
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.581
|
0.746
|
0.182
|
0.263
|
-0.241
|
0.395
|
-0.599
|
1.021
|
— | — | — | — | — |
No JSON data available for plots.