Hg_chrom8_TN10mRNA_16197
Organism: Heterodera glycines Gene Locus: chr8:7488850-7493762 Feature type: polypeptideProtein Sequence
Length: 785
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.83 | 0.681 | 1.089 | 0.483 | 1.231 | 1.699 | 0.971 | 1.72 | 0.991 | 0.947 | 0.849 | 1.124 | 0.991 | 0.784 | 1.534 | 1.019 | 1.086 | 0.772 | 0.98 | 0.787 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15303
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
QKRKK,RKECVPVREQEDRESRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.293
|
0.184
|
0.021
|
0.572
|
0.311
|
0.485
|
0.503
|
0.013
|
0.462
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012298
|
1.000
|
1.000
|
Hsc_gene_3751.t1
|
— | — |
Q96SU4.2 Oxysterol-binding protein-related protein 9 [Homo sapiens]
|
KAF7638107.1 Oxysterol-binding protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
GO:0005575_0.853|GO:0110165_0.853|GO:0008150_0.826|GO:0005622_0.769|GO:0009987_0.729|GO:0016020_0.717|GO:0043226_0.672|GO:0043229_0.654|GO:0005737_0.616|GO:0043227_0.603|GO:0043231_0.583|GO:0071944_0.557|GO:0003674_0.518|GO:0005886_0.518
|
IPR000648+1-759_421-715+|IPR001849+1-92_1-93_1-95+|IPR011993+1-96+|IPR018494+540-550+|IPR037239+411-772+
|
SM00233+1-95+
|
PF00169+1-92+PH_domain|PF01237+421-715+Oxysterol-binding_protein
|
G3DSA:1.10.287.2720:FF:000001+437-502+Oxysterol-binding_OBPalpha|G3DSA:2.40.160.120:FF:000014+503-702+Oxysterol-binding_protein
|
PTHR10972+1-759+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
107-382;773-785
|
2.000
|
1-106;383-772
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.682
|
88295.750
|
7.372
|
11.500
|
29.936
|
10.955
|
53.248
|
46.752
|
16.561
|
13.376
|
48.535
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1467.295
|
1981.187
|
1667.670
|
1626.696
|
1799.404
|
1848.964
|
2688.245
|
1212.627
|
1426.369
|
540.343
|
920.068
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.478
|
-0.421
|
— |
0.114
|
— |
0.550
|
-0.714
|
1.291
|
— | — | — | — | — |
No JSON data available for plots.