Hg_chrom8_TN10mRNA_16199
Organism: Heterodera glycines Gene Locus: chr8:7499036-7521620 Feature type: polypeptideProtein Sequence
Length: 2,287
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.946 | 1.088 | 0.938 | 0.498 | 0.94 | 1.289 | 0.958 | 1.487 | 1.273 | 1.312 | 0.424 | 1.672 | 1.543 | 0.849 | 1.267 | 0.831 | 0.753 | 1.126 | 0.975 | 0.746 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15305
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KKRK,RPRR,RRRR,RKCIEFALKAKPHRR,RRRLPNLAAIYGARRGRT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.058
|
0.112
|
0.010
|
0.164
|
0.171
|
0.297
|
0.130
|
0.005
|
0.909
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012300
|
1.000
|
1.000
|
Hsc_gene_3754.t1
|
Hsc_gene_3754.t1
|
— |
Q24270.2 Voltage-dependent calcium channel type D subunit alpha-1 [Drosophila melanogaster]
|
UOW59890.1 voltage-dependent calcium channel L type subunit alpha-1D, partial [Heterodera elachista]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005216|GO:0005245|GO:0005891|GO:0006811|GO:0016020|GO:0055085|GO:0070588
|
GO:0008150_0.978|GO:0006810_0.953|GO:0051179_0.953|GO:0051234_0.953|GO:0005575_0.938|GO:0071944_0.938|GO:0110165_0.938|GO:0005886_0.935|GO:0016020_0.935|GO:0009987_0.933|GO:0055085_0.921|GO:0006811_0.899|GO:0003674_0.897|GO:0005215_0.897|GO:0022857_0.897|GO:0005216_0.893|GO:0015075_0.893|GO:0015267_0.893|GO:0022803_0.893|GO:0034220_0.893|GO:0006812_0.868|GO:0030001_0.868|GO:0098660_0.861|GO:0008324_0.848|GO:0022836_0.848|GO:0098655_0.848|GO:0015318_0.843|GO:0005261_0.838|GO:0098662_0.833|GO:0022890_0.816|GO:0046873_0.807|GO:0005244_0.752|GO:0022832_0.752|GO:0022843_0.730|GO:0006816_0.729|GO:0070588_0.707|GO:0065007_0.682|GO:0015085_0.677|GO:0005262_0.673|GO:0050789_0.667|GO:0005245_0.647|GO:0032501_0.607|GO:0007154_0.580|GO:0023052_0.568|GO:0030054_0.568|GO:0050896_0.563|GO:0003008_0.560|GO:0050794_0.541|GO:0005622_0.534|GO:0045202_0.525|GO:0005488_0.522
|
IPR002077+260-275_381-398_420-444_688-714_1128-1148_1298-1312_1346-1358+|IPR005446+168-186_219-230_429-442_501-519_590-605+|IPR005821+140-430_524-761_860-1137_1180-1436+|IPR014873+1509-1584_1561-1595+|IPR027359+132-259_515-637_851-970_1170-1297+|IPR031649+1446-1499+|IPR050599+40-1649+
|
SM01062+1561-1595+
|
PF00520+140-430_524-761_860-1137_1180-1436+Ion_transport_protein|PF08763+1509-1584+Voltage_gated_calcium_channel_IQ_domain|PF16905+1446-1499+Voltage-dependent_L-type_calcium_channel,_IQ-associated
|
G3DSA:1.10.287.70:FF:000007+336-424+Voltage-dependent_L-type_calcium_channel_subunit_alpha|G3DSA:1.10.287.70:FF:000009+1299-1437+Voltage-dependent_L-type_calcium_channel_subunit_alpha|G3DSA:1.10.287.70:FF:000107+639-790+Voltage-dependent_L-type_calcium_channel_subunit_alpha|G3DSA:1.10.287.70:FF:000117+979-1157+Voltage-gated_Ca2+_channel,_alpha_subunit|G3DSA:1.20.120.350:FF:000001+514-637+Voltage-dependent_L-type_calcium_channel_subunit_alpha|G3DSA:1.20.120.350:FF:000006+851-972+Voltage-dependent_L-type_calcium_channel_subunit_alpha|G3DSA:1.20.120.350:FF:000064+1170-1297+Voltage-dependent_L-type_calcium_channel_subunit_alpha|G3DSA:1.20.120.350:FF:000095+131-255+Voltage-gated_Ca2+_channel,_alpha_subunit
|
PTHR45628+40-1649+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-117;765-819;1619-2287
|
2.000
|
118-764;820-1618
|
8hmb_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.601
|
254915.030
|
6.341
|
-7.000
|
22.781
|
12.331
|
42.895
|
57.105
|
11.981
|
10.800
|
49.716
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3070.432
|
6809.687
|
5299.619
|
2799.270
|
996.326
|
932.980
|
498.149
|
2352.914
|
1919.370
|
4610.257
|
3457.019
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.591
|
-1.420
|
-0.812
|
-1.522
|
— |
-0.895
|
1.233
|
-2.099
|
— | — | — | — | — |
No JSON data available for plots.