Hg_chrom8_TN10mRNA_16200
Organism: Heterodera glycines Gene Locus: chr8:7527134-7535271 Feature type: polypeptideProtein Sequence
Length: 942
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.271 | 0.642 | 0.425 | 0.329 | 0.566 | 2.341 | 1.883 | 2.707 | 0.425 | 0.603 | 0.29 | 3.684 | 0.885 | 2.878 | 0.693 | 0.622 | 0.644 | 0.499 | 0.327 | 0.343 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15306
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.866
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKR,KPPKPKRQRQRKA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.901
|
0.067
|
0.025
|
0.421
|
0.042
|
0.055
|
0.072
|
0.004
|
0.022
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012301
|
1.000
|
1.000
|
Hsc_gene_3755.t1
|
Hsc_gene_3755.t1
|
— | — |
KAF7638111.1 LID domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.938|GO:0005488_0.912|GO:0008150_0.840|GO:0005515_0.828|GO:0065007_0.803|GO:0009987_0.795|GO:0050789_0.795|GO:0050794_0.784|GO:0005575_0.777|GO:0110165_0.774|GO:0008152_0.719|GO:0019222_0.710|GO:0031323_0.710|GO:0044237_0.710|GO:0048518_0.710|GO:0048522_0.710|GO:0044238_0.706|GO:0080090_0.706|GO:0043170_0.700|GO:0060255_0.700|GO:0009058_0.687|GO:0009889_0.684|GO:0031326_0.683|GO:0044249_0.683|GO:0009059_0.681|GO:0010556_0.681|GO:0010467_0.680|GO:0010468_0.680|GO:0009893_0.674|GO:0006139_0.672|GO:0016070_0.672|GO:0019219_0.672|GO:0051252_0.672|GO:0090304_0.672|GO:0010604_0.670|GO:0032774_0.660|GO:0034654_0.660|GO:0141187_0.660|GO:0006351_0.656|GO:0006355_0.656|GO:2001141_0.656|GO:0009891_0.655|GO:0031325_0.654|GO:0045935_0.647|GO:0051254_0.647|GO:0031328_0.641|GO:0010557_0.639|GO:0006357_0.638|GO:0006366_0.638|GO:0045893_0.624|GO:1902680_0.624|GO:0045944_0.615|GO:0005622_0.588|GO:0016020_0.581|GO:0043226_0.532|GO:0043229_0.521|GO:0032502_0.501|GO:0048856_0.501
|
IPR029005+157-913_369-593+|IPR041363+805-844_806-833+
|
— |
PF01803+369-593+LIM-domain_binding_protein|PF17916+806-833+LIM_interaction_domain_(LID)
|
— |
PTHR10378+157-913+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-355;567-942
|
1.000
|
356-566
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.973
|
97279.700
|
7.444
|
21.500
|
16.454
|
10.191
|
36.624
|
63.376
|
10.722
|
5.732
|
59.342
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1670.741
|
3952.013
|
2294.362
|
1321.680
|
1169.464
|
1332.187
|
1113.490
|
978.313
|
1497.929
|
1625.477
|
1570.814
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.014
|
-1.717
|
-0.688
|
-0.209
|
0.203
|
-0.250
|
-0.548
|
0.326
|
— | — | — | — | — |
No JSON data available for plots.