Hg_chrom8_TN10mRNA_16201
Organism: Heterodera glycines Gene Locus: chr8:7539512-7541171 Feature type: polypeptideProtein Sequence
Length: 439
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.848 | 0.954 | 0.994 | 0.785 | 0.987 | 1.343 | 0.732 | 1.708 | 1.063 | 1.508 | 1.415 | 1.072 | 1.266 | 0.832 | 1.209 | 1.009 | 0.635 | 0.552 | 1.927 | 0.335 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15307
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRNNKEKSVTGGRRTKKA
|
18-41
|
0.919
|
— | — | — | — |
0.000
|
— | — |
0.712
|
0.178
|
0.038
|
0.418
|
0.157
|
0.027
|
0.068
|
0.047
|
0.182
|
0.168
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000079
|
6.000
|
11.000
|
Hsc_gene_11676.t1;Hsc_gene_24520.t1;Hsc_gene_24520.t2;Hsc_gene_24523.t1;Hsc_gene_24523.t2;Hsc_gene_3438.t1;Hsc_gene_5165.t1;Hsc_gene_5520.t1;Hsc_gene_5520.t2;Hsc_gene_5521.t1;Hsc_gene_5521.t2
|
Hsc_gene_22056.t1;Hsc_gene_3114.t1;Hsc_gene_762.t1
|
— | — | — |
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR009689+11-130+
|
— |
PF06918+11-130+Protein_of_unknown_function_(DUF1280)
|
— |
PTHR31424+43-156+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
405-439
|
1.000
|
1-404
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.798
|
49985.470
|
9.885
|
24.500
|
30.068
|
11.617
|
50.342
|
49.658
|
18.679
|
11.390
|
44.191
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
35.045
|
13.434
|
13.510
|
42.093
|
44.068
|
28.373
|
36.701
|
17.708
|
3.084
|
77.552
|
45.637
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.510
|
1.751
|
— |
-0.620
|
— | — |
1.196
|
— | — | — | — | — |
No JSON data available for plots.