Hg_chrom8_TN10mRNA_16211
Organism: Heterodera glycines Gene Locus: chr8:7600180-7602210 Feature type: polypeptideProtein Sequence
Length: 246
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.513 | 1.134 | 0.887 | 0.981 | 1.152 | 0.625 | 0.774 | 1.016 | 1.355 | 1.373 | 0.308 | 0.717 | 0.79 | 0.547 | 0.996 | 1.103 | 0.933 | 1.725 | 0.313 | 0.359 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15316
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — | — | — |
48-72
|
0.937
|
— | — |
0.000
|
— | — |
0.582
|
0.269
|
0.125
|
0.465
|
0.235
|
0.350
|
0.281
|
0.116
|
0.059
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004762
|
3.000
|
0.000
|
0.000
|
— | — |
O62106.1 Eukaryotic translation initiation factor 6 [Caenorhabditis elegans]
|
KAI1717804.1 eIF-6 family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042256|GO:0043022
|
GO:0005575_0.779|GO:0110165_0.764|GO:0008150_0.758|GO:0009987_0.686|GO:0016020_0.683|GO:0005622_0.680|GO:0043226_0.619|GO:0043229_0.597|GO:0043227_0.590|GO:0005737_0.582|GO:0043231_0.571
|
IPR002769+1-246_2-227_3-224_3-245_4-205_5-204_5-225+
|
SM00654+4-205+
|
PF01912+5-204+eIF-6_family
|
G3DSA:3.75.10.10:FF:000001+1-226+Eukaryotic_translation_initiation_factor_6
|
PTHR10784+3-245+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-246
|
9qiw_CA
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.657
|
25993.640
|
4.525
|
-9.500
|
20.732
|
6.504
|
41.463
|
58.537
|
8.943
|
11.789
|
59.756
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2815.091
|
4797.417
|
4894.996
|
4943.768
|
3648.783
|
3301.112
|
2941.393
|
2514.954
|
1445.767
|
1090.789
|
1242.922
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.199
|
-0.094
|
0.122
|
-0.470
|
-0.130
|
-0.156
|
-0.497
|
0.368
|
— | — | — | — | — |
No JSON data available for plots.