Hg_chrom8_TN10mRNA_16212
Organism: Heterodera glycines Gene Locus: chr8:7602617-7607644 Feature type: polypeptideProtein Sequence
Length: 613
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.195 | 0.986 | 1.038 | 0.619 | 1.305 | 1.464 | 0.699 | 2.529 | 0.725 | 1.19 | 0.742 | 0.768 | 0.997 | 1.004 | 1.998 | 0.932 | 0.776 | 0.544 | 0.627 | 0.288 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15317
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRSR,PTPPKGAAPKPRR,RRFLKRLGRKRRTER,KRCPVDVAEGQCRRFLKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.363
|
0.270
|
0.045
|
0.525
|
0.189
|
0.274
|
0.363
|
0.098
|
0.470
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000928
|
3.000
|
3.000
|
Hsc_gene_1571.t1;Hsc_gene_6516.t1;Hsc_gene_6517.t1
|
Hsc_gene_6516.t1;Hsc_gene_6517.t1;Hsc_gene_6521.t1
|
— |
A8VU90.1 Ankyrin repeat and LEM domain-containing protein 1 [Mus musculus]
|
KAI1717805.1 ankyrin repeat and LEM domain-containing protein 1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004519|GO:0005515
|
GO:0008150_0.865|GO:0009987_0.823|GO:0005575_0.777|GO:0110165_0.768|GO:0005622_0.726|GO:0043226_0.679|GO:0043229_0.659|GO:0008152_0.647|GO:0043170_0.647|GO:0044238_0.632|GO:0003674_0.628|GO:0006139_0.623|GO:0090304_0.600|GO:0005737_0.567|GO:0016020_0.548
|
IPR002110+43-72_43-75_46-74+|IPR003887+339-383+|IPR011015+339-384+|IPR034998+10-166+|IPR036770+8-108_22-85+
|
SM00248+43-72+
|
PF00023+46-74+Ankyrin_repeat|PF22945+450-612+LEM-3-like_GIY-YIG_domain
|
— |
PTHR46427+10-166+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
126-436
|
2.000
|
1-125;437-613
|
9ivp_VA
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.752
|
69104.310
|
8.576
|
22.500
|
33.279
|
10.440
|
54.486
|
45.514
|
19.739
|
13.540
|
47.961
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
red
|
818.385
|
664.572
|
811.864
|
948.072
|
1050.477
|
1153.603
|
740.971
|
542.811
|
722.681
|
821.287
|
779.027
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.376
|
0.333
|
— | — |
-0.628
|
-1.194
|
0.592
|
— | — | — | — | — |
No JSON data available for plots.