Hg_chrom8_TN10mRNA_16217
Organism: Heterodera glycines Gene Locus: chr8:7616807-7621004 Feature type: polypeptideProtein Sequence
Length: 471
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.234 | 1.037 | 1.042 | 0.879 | 0.743 | 1.633 | 0.834 | 3.185 | 0.566 | 1.119 | 0.836 | 0.874 | 0.649 | 1.143 | 2.21 | 0.667 | 0.975 | 0.45 | 0.98 | 0.187 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15322
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.765
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRFLKRLGRKRRTER,KRCPVDVAEGQCRRFLKR,RQMPSAPPPTPPKGAAPKPRRSSTRGRTKG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.530
|
0.294
|
0.036
|
0.359
|
0.065
|
0.117
|
0.224
|
0.183
|
0.319
|
0.136
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000928
|
3.000
|
3.000
|
Hsc_gene_1571.t1;Hsc_gene_6516.t1;Hsc_gene_6517.t1
|
Hsc_gene_6517.t1
|
— | — |
KAI1717805.1 ankyrin repeat and LEM domain-containing protein 1 [Ditylenchus destructor]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.888|GO:0110165_0.880|GO:0005622_0.812|GO:0043226_0.761|GO:0043229_0.750|GO:0008150_0.743|GO:0009987_0.694|GO:0003674_0.682|GO:0005737_0.653|GO:0016020_0.577|GO:0071840_0.541|GO:0016043_0.540|GO:0043227_0.501
|
IPR002110+43-72_43-75_46-74_382-413+|IPR003887+292-336+|IPR011015+292-337+|IPR036770+8-108_22-412+|IPR051226+42-301+
|
SM00248+43-72_382-413+
|
PF00023+46-74+Ankyrin_repeat
|
— |
PTHR24179+42-301+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
126-373;412-471
|
2.000
|
1-125;374-411
|
9ivp_VA
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.681
|
52932.590
|
10.776
|
44.000
|
32.909
|
10.616
|
54.352
|
45.648
|
22.718
|
10.191
|
49.894
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
139.410
|
101.581
|
161.122
|
160.505
|
180.083
|
239.354
|
311.614
|
193.744
|
117.015
|
16.656
|
59.667
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.433
|
0.522
|
— | — |
0.426
|
0.392
|
— |
0.830
|
— | — |
3.383
|
— | — |
No JSON data available for plots.