Hg_chrom8_TN10mRNA_16221
Organism: Heterodera glycines Gene Locus: chr8:7640125-7645206 Feature type: polypeptideProtein Sequence
Length: 174
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.601 | 1.337 | 1.045 | 0.595 | 1.628 | 0.884 | 0.684 | 0.575 | 1.788 | 1.165 | 0.958 | 1.69 | 1.756 | 0.442 | 1.173 | 1.478 | 0.377 | 0.522 | 0.884 | 1.183 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15326
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.457
|
0.183
|
0.008
|
0.512
|
0.256
|
0.315
|
0.405
|
0.060
|
0.425
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012304
|
1.000
|
1.000
|
Hsc_gene_3776.t3
|
Hsc_gene_3776.t1;Hsc_gene_3776.t2;Hsc_gene_3776.t3
|
— |
P49808.1 Regulator of G-protein signaling rgs-2 [Caenorhabditis elegans]
|
KAF7639350.1 RGS domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.889|GO:0009987_0.770|GO:0005575_0.759|GO:0110165_0.759|GO:0003674_0.720|GO:0050896_0.711|GO:0065007_0.708|GO:0050789_0.706|GO:0050794_0.685|GO:0016020_0.637|GO:0051716_0.629|GO:0007154_0.590|GO:0023052_0.588|GO:0007165_0.581|GO:0005622_0.568|GO:0005488_0.554|GO:0007186_0.552|GO:0005515_0.533
|
IPR016137+46-67_49-163_49-165_68-86_97-120_139-158+|IPR024066+44-164+|IPR036305+42-168+|IPR044926+71-150+
|
SM00315+49-165+
|
PF00615+49-163+Regulator_of_G_protein_signaling_domain
|
G3DSA:1.10.167.10:FF:000001+73-146+Putative_regulator_of_g-protein_signaling_12
|
PTHR10845+35-166+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-174
|
4igu_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.523
|
20065.680
|
4.795
|
-5.000
|
28.736
|
12.644
|
50.575
|
49.425
|
13.218
|
15.517
|
42.529
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
591.873
|
405.024
|
1191.819
|
481.796
|
208.711
|
158.710
|
368.120
|
638.936
|
485.491
|
930.408
|
739.729
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.329
|
— |
-1.199
|
-1.239
|
-0.381
|
1.225
|
1.910
|
-0.654
|
— | — | — | — | — |
No JSON data available for plots.