Hg_chrom8_TN10mRNA_16222
Organism: Heterodera glycines Gene Locus: chr8:7654412-7667093 Feature type: polypeptideProtein Sequence
Length: 1,007
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.132 | 1.062 | 0.849 | 0.514 | 0.662 | 2.75 | 1.182 | 2.483 | 0.772 | 0.805 | 0.587 | 1.168 | 0.69 | 1.089 | 0.953 | 1.277 | 0.863 | 0.722 | 0.306 | 0.73 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15327
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PKRPR,QPKRP,RKLRDEDKRADKRRKSN,RTHRRPPPLFPPRGRTMTQSERQDKRGKRGRERKNGG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.872
|
0.086
|
0.005
|
0.380
|
0.043
|
0.051
|
0.027
|
0.005
|
0.148
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004828
|
1.000
|
2.000
|
Hsc_gene_3774.t1;Hsc_gene_3774.t2
|
Hsc_gene_3774.t1;Hsc_gene_3774.t2
|
— |
G5EDF0.1 Grainyhead-like protein 1 homolog [Caenorhabditis elegans]
|
KAF7639351.1 Protein grainyhead [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003700|GO:0006357
|
GO:0008150_0.965|GO:0003674_0.878|GO:0005575_0.875|GO:0110165_0.874|GO:0005488_0.841|GO:0005622_0.797|GO:0009987_0.788|GO:0065007_0.787|GO:0050789_0.775|GO:0097159_0.769|GO:0050794_0.763|GO:0003676_0.760|GO:0016020_0.750|GO:0043226_0.744|GO:0043229_0.736|GO:0003677_0.680|GO:0003690_0.675|GO:0043565_0.675|GO:1990837_0.675|GO:0043227_0.666|GO:0043231_0.657|GO:0005634_0.647|GO:0008152_0.638|GO:0043170_0.638|GO:0044238_0.627|GO:0019222_0.624|GO:0044237_0.623|GO:0080090_0.618|GO:0009058_0.617|GO:0009059_0.617|GO:0010467_0.617|GO:0044249_0.617|GO:0031323_0.615|GO:0060255_0.614|GO:0009889_0.601|GO:0031326_0.601|GO:0006139_0.600|GO:0034654_0.598|GO:0010468_0.596|GO:0010556_0.596|GO:0016070_0.595|GO:0032774_0.595|GO:0090304_0.595|GO:0141187_0.595|GO:0048518_0.588|GO:0019219_0.571|GO:0051252_0.571|GO:0032501_0.568|GO:0000976_0.564|GO:0001067_0.564|GO:0048522_0.562|GO:2001141_0.556|GO:0006351_0.554|GO:0006355_0.554|GO:0006366_0.542|GO:0032502_0.542|GO:0048856_0.542|GO:0006357_0.541|GO:0009893_0.526|GO:0043228_0.520|GO:0043232_0.520|GO:0010604_0.517|GO:0031325_0.516|GO:0009891_0.508|GO:0031328_0.507
|
IPR007604+417-681_418-612+|IPR040167+710-792+
|
— |
PF04516+418-612+CP2_transcription_factor
|
— |
PTHR11037+710-792+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-110;344-414;597-679;812-1007
|
3.000
|
111-343;415-596;680-811
|
5mr7_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.872
|
108460.630
|
7.630
|
24.000
|
22.145
|
10.328
|
51.639
|
48.361
|
13.505
|
8.640
|
55.015
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
blue
|
1464.011
|
773.289
|
475.700
|
332.295
|
486.061
|
1462.201
|
152.781
|
408.015
|
74.118
|
4815.579
|
2783.525
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.929
|
-1.356
|
-0.410
|
0.516
|
1.604
|
-3.249
|
-1.946
|
-1.275
|
-3.964
|
— | — | — | — |
No JSON data available for plots.