Hg_chrom8_TN10mRNA_16224
Organism: Heterodera glycines Gene Locus: chr8:7673497-7678532 Feature type: polypeptideProtein Sequence
Length: 483
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.035 | 0.819 | 1.129 | 0.785 | 1.346 | 1.221 | 0.912 | 1.242 | 0.644 | 1.035 | 0.439 | 1.705 | 0.978 | 0.796 | 1.817 | 1.065 | 1.222 | 0.753 | 0.796 | 0.67 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15329
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.843
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
30-81
|
0.992
|
— | — |
0.000
|
— | — |
0.411
|
0.202
|
0.039
|
0.513
|
0.176
|
0.288
|
0.218
|
0.036
|
0.058
|
0.354
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002519
|
2.000
|
2.000
|
Hsc_gene_16859.t1;Hsc_gene_3771.t1
|
— | — |
Q4R7K1.1 mRNA cap guanine-N7 methyltransferase [Macaca fascicularis]
|
KAF7639353.1 mRNA cap guanine-N7 methyltransferase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004482|GO:0006370
|
GO:0008150_0.952|GO:0005575_0.682|GO:0110165_0.674|GO:0009987_0.641|GO:0003674_0.631|GO:0005622_0.623|GO:0016020_0.575|GO:0043226_0.552|GO:0043229_0.533|GO:0008152_0.530|GO:0044238_0.523|GO:0043170_0.522|GO:0044237_0.516|GO:0009058_0.505
|
IPR004971+44-429_66-430+|IPR016899+7-432_429-483+|IPR029063+63-431_83-300+|IPR039753+23-326+
|
— |
PF03291+44-429+mRNA_(guanine-N(7))-methyltransferase_domain
|
— |
PTHR12189+23-326+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-36;318-483
|
1.000
|
37-317
|
5e9w_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.543
|
53782.920
|
5.663
|
-6.000
|
28.571
|
9.317
|
51.760
|
48.240
|
14.286
|
14.286
|
52.588
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
818.987
|
1357.378
|
900.350
|
725.942
|
739.034
|
687.331
|
868.063
|
532.630
|
580.466
|
968.694
|
802.311
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.822
|
-1.040
|
-0.201
|
— | — |
0.347
|
-0.473
|
0.848
|
— | — | — | — | — |
No JSON data available for plots.