Hg_chrom8_TN10mRNA_16227
Organism: Heterodera glycines Gene Locus: chr8:7685193-7690757 Feature type: polypeptideProtein Sequence
Length: 639
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.928 | 1.055 | 1.195 | 0.324 | 1.852 | 1.725 | 0.652 | 1.252 | 0.974 | 1.248 | 0.64 | 0.736 | 1.0 | 0.451 | 1.82 | 1.185 | 0.693 | 0.782 | 0.482 | 0.552 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15332
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRK
|
21-41
|
0.986
|
— | — | — | — |
0.000
|
— | — |
0.815
|
0.086
|
0.009
|
0.335
|
0.029
|
0.063
|
0.061
|
0.017
|
0.030
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012307
|
1.000
|
1.000
|
Hsc_gene_3768.t1
|
Hsc_gene_3768.t1
|
— |
Q80YF0.1 Mitotic spindle assembly checkpoint protein MAD1 [Cricetulus griseus]
|
KAI1713943.1 mitotic checkpoint protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007094
|
GO:0008150_0.954|GO:0005575_0.916|GO:0009987_0.909|GO:0110165_0.907|GO:0005622_0.878|GO:0065007_0.868|GO:0050789_0.860|GO:0050794_0.838|GO:0043226_0.813|GO:0071840_0.792|GO:0043229_0.791|GO:0016043_0.790|GO:0032502_0.786|GO:0048856_0.786|GO:0032501_0.784|GO:0005737_0.763|GO:0007275_0.761|GO:0048731_0.751|GO:0048519_0.750|GO:0048523_0.733|GO:0006996_0.732|GO:0048513_0.713|GO:0051239_0.707|GO:0007049_0.697|GO:0022402_0.697|GO:0032991_0.695|GO:0000280_0.692|GO:0048285_0.692|GO:0008283_0.691|GO:0002376_0.688|GO:0043228_0.688|GO:0043232_0.688|GO:0000278_0.686|GO:0140014_0.686|GO:1903047_0.686|GO:0051726_0.684|GO:0007155_0.682|GO:0042127_0.682|GO:0010564_0.681|GO:0002682_0.680|GO:0051241_0.680|GO:0001775_0.677|GO:0007346_0.677|GO:0030155_0.677|GO:0045321_0.677|GO:0098609_0.677|GO:0046649_0.676|GO:0044770_0.675|GO:0044772_0.675|GO:0048732_0.675|GO:1901987_0.675|GO:0002683_0.674|GO:0008285_0.674|GO:0022407_0.674|GO:0042110_0.674|GO:1901990_0.674|GO:0002520_0.670|GO:0002694_0.670|GO:0002695_0.670|GO:0007159_0.670|GO:0007162_0.670|GO:0022408_0.670|GO:0032943_0.670|GO:0032944_0.670|GO:0032945_0.670|GO:0042098_0.670|GO:0042129_0.670|GO:0042130_0.670|GO:0046651_0.670|GO:0048534_0.670|GO:0048538_0.670|GO:0050670_0.670|GO:0050672_0.670|GO:0050863_0.670|GO:0050865_0.670|GO:0050866_0.670|GO:0050868_0.670|GO:0051249_0.670|GO:0051250_0.670|GO:0070661_0.670|GO:0070663_0.670|GO:0070664_0.670|GO:1903037_0.670|GO:1903038_0.670|GO:0005856_0.629|GO:0099080_0.616|GO:0015630_0.594|GO:0005694_0.564|GO:0005819_0.549|GO:0098687_0.549|GO:0000775_0.548|GO:0000793_0.547|GO:0000776_0.545|GO:0000779_0.545|GO:0000922_0.545|GO:1990706_0.540|GO:1990728_0.540
|
IPR008672+312-615_504-614+
|
— |
PF05557+504-614+Mitotic_checkpoint_protein
|
— |
PTHR23168+312-615+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-64;243-286;447-514;636-639
|
3.000
|
65-242;287-446;515-635
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.679
|
72691.420
|
4.907
|
-21.000
|
33.333
|
8.607
|
57.121
|
42.879
|
15.649
|
17.684
|
45.540
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1194.281
|
1018.742
|
756.751
|
968.184
|
1338.210
|
1250.758
|
1882.090
|
701.540
|
724.735
|
1712.825
|
1289.358
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.659
|
-0.211
|
0.464
|
0.435
|
— |
0.601
|
-0.940
|
1.568
|
— | — | — | — | — |
No JSON data available for plots.