Hg_chrom8_TN10mRNA_16229
Organism: Heterodera glycines Gene Locus: chr8:7695218-7701202 Feature type: polypeptideProtein Sequence
Length: 581
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.841 | 0.56 | 1.22 | 0.653 | 0.889 | 0.883 | 0.881 | 1.807 | 1.453 | 1.256 | 0.495 | 1.114 | 1.195 | 1.092 | 1.546 | 0.713 | 0.875 | 1.043 | 2.383 | 0.911 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15334
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.969
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
nucleus
|
RKEWRRRHRRR
|
— | — | — | — | — |
0.523
|
0.090
|
3.000
|
— |
0.192
|
0.117
|
0.096
|
0.115
|
0.746
|
0.234
|
0.149
|
0.021
|
0.192
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012309
|
1.000
|
1.000
|
Hsc_gene_3766.t2
|
Hsc_gene_3766.t1;Hsc_gene_3766.t2
|
— |
Q0VCR6.1 DGAT1/2-independent enzyme synthesizing storage lipids [Bos taurus]
|
KAI6192825.1 PlsC domain-containing protein [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016746
|
GO:0008150_0.965|GO:0009987_0.919|GO:0005575_0.916|GO:0110165_0.915|GO:0003674_0.892|GO:0016020_0.886|GO:0005622_0.760|GO:0005886_0.755|GO:0071944_0.755|GO:0008152_0.750|GO:0043226_0.743|GO:0003824_0.742|GO:0044238_0.741|GO:0044237_0.739|GO:0009058_0.735|GO:0044249_0.723|GO:0043229_0.721|GO:0005737_0.713|GO:0043227_0.704|GO:0016740_0.693|GO:0006629_0.691|GO:0008610_0.686|GO:0043231_0.685|GO:0044255_0.684|GO:0046486_0.678|GO:0045017_0.675|GO:0006638_0.670|GO:0006639_0.670|GO:0006641_0.670|GO:0019432_0.670|GO:0046460_0.670|GO:0046463_0.670|GO:0016746_0.668|GO:0016747_0.658|GO:0005773_0.538|GO:0012505_0.514
|
IPR002123+227-352+
|
— |
PF01553+227-352+Acyltransferase
|
— |
PTHR22753+190-455+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
456-581
|
1.000
|
1-455
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.549
|
66081.590
|
6.777
|
3.500
|
26.506
|
14.114
|
42.685
|
57.315
|
14.458
|
12.048
|
48.537
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
2128.348
|
2702.547
|
2988.088
|
2565.677
|
3041.868
|
3945.862
|
2148.835
|
3673.091
|
1185.996
|
522.287
|
806.734
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.212
|
— |
0.214
|
0.390
|
-0.868
|
— |
-0.632
|
— | — | — | — | — |