Hg_chrom8_TN10mRNA_16231
Organism: Heterodera glycines Gene Locus: chr8:7706022-7708043 Feature type: polypeptideProtein Sequence
Length: 244
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.001 | 0.858 | 1.043 | 0.565 | 2.596 | 1.366 | 0.683 | 0.41 | 0.911 | 0.775 | 0.807 | 0.964 | 0.683 | 0.552 | 1.924 | 0.703 | 0.941 | 1.056 | 1.892 | 0.362 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15336
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.931
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KKKR
|
9-37
|
0.993
|
43-67
|
0.973
|
— | — |
0.000
|
— | — |
0.091
|
0.917
|
0.073
|
0.128
|
0.023
|
0.017
|
0.057
|
0.011
|
0.036
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004829
|
1.000
|
2.000
|
Hsc_gene_3764.t1;Hsc_gene_3764.t2
|
Hsc_gene_3764.t1;Hsc_gene_3764.t2;Hsc_gene_3765.t1
|
— | — |
NP_493277.2 RNA-binding S4 domain-containing protein [Caenorhabditis elegans];CAB54199.2 RNA-binding S4 domain-containing protein [Caenorhabditis elegans]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723
|
— |
IPR002942+112-169+|IPR036986+108-163+
|
SM00363+112-169+
|
— | — |
PTHR13633+58-205+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
60-107;206-244
|
2.000
|
1-59;108-205
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.874
|
28021.020
|
4.488
|
-15.000
|
36.885
|
6.967
|
56.557
|
43.443
|
15.574
|
21.311
|
45.902
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
greenyellow
|
958.178
|
475.350
|
604.883
|
616.153
|
812.557
|
653.376
|
720.145
|
565.833
|
1348.885
|
1512.256
|
1442.240
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.237
|
— |
0.367
|
-0.300
|
— |
-0.313
|
0.491
|
— | — | — | — | — |
No JSON data available for plots.