Hg_chrom8_TN10mRNA_16232
Organism: Heterodera glycines Gene Locus: chr8:7708161-7710858 Feature type: polypeptideProtein Sequence
Length: 276
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.927 | 0.674 | 1.186 | 0.875 | 1.449 | 1.394 | 1.337 | 0.543 | 1.047 | 0.881 | 0.439 | 1.279 | 0.805 | 0.627 | 2.144 | 0.776 | 1.188 | 0.933 | 1.115 | 0.107 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15337
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
PRTKRRQ,RRTTGDRIRDRDGFRRRAA
|
54-74
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.556
|
0.417
|
0.147
|
0.461
|
0.049
|
0.084
|
0.080
|
0.303
|
0.086
|
0.177
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012311
|
1.000
|
1.000
|
Hsc_gene_3763.t1
|
Hsc_gene_3763.t1
|
— |
Q8R2U6.1 Diphosphoinositol polyphosphate phosphohydrolase 2 [Mus musculus]
|
KAI1713936.1 NUDIX domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0003674_0.675|GO:0005575_0.644|GO:0110165_0.633|GO:0008150_0.521|GO:0005622_0.513
|
IPR000086+57-211_99-207+|IPR015797+85-207+|IPR020084+120-141+|IPR020476+115-129_129-144+
|
— |
PF00293+99-207+NUDIX_domain
|
— |
PTHR12629+34-214+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-53;242-276
|
1.000
|
54-241
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.595
|
30311.860
|
5.289
|
-3.500
|
29.710
|
5.797
|
50.725
|
49.275
|
14.493
|
15.217
|
53.261
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1173.414
|
418.247
|
819.896
|
1267.591
|
1418.659
|
1301.024
|
1185.379
|
550.711
|
1858.711
|
1129.089
|
1441.784
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
1.462
|
0.737
|
— | — | — |
-1.347
|
1.250
|
— | — | — | — | — |
No JSON data available for plots.