Hg_chrom8_TN10mRNA_16233
Organism: Heterodera glycines Gene Locus: chr8:7712725-7716287 Feature type: polypeptideProtein Sequence
Length: 267
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.871 | 0.61 | 0.749 | 1.033 | 1.311 | 0.768 | 0.713 | 2.622 | 1.914 | 1.417 | 1.021 | 1.102 | 1.144 | 0.576 | 1.147 | 1.284 | 0.491 | 0.851 | 0.576 | 0.551 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15338
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.951
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRVADGAQMVLKKVRI
|
— | — |
4-29
|
0.998
|
— | — |
0.000
|
— | — |
0.565
|
0.257
|
0.028
|
0.591
|
0.067
|
0.262
|
0.082
|
0.006
|
0.168
|
0.099
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012312
|
1.000
|
1.000
|
Hsc_gene_3762.t1
|
Hsc_gene_3762.t1
|
— |
Q96PY6.2 Serine/threonine-protein kinase Nek1 [Homo sapiens]
|
KAF7639346.1 Protein kinase domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.927|GO:0009987_0.812|GO:0005575_0.779|GO:0110165_0.773|GO:0005622_0.684|GO:0065007_0.677|GO:0050789_0.665|GO:0003674_0.636|GO:0050794_0.612|GO:0003824_0.600|GO:0016740_0.574|GO:0005737_0.548|GO:0140096_0.532|GO:0016772_0.502|GO:0043226_0.502
|
IPR000719+9-256_9-267_10-253+|IPR008271+122-134+|IPR011009+6-258+|IPR017441+15-38+|IPR051131+8-255+
|
SM00220+9-256+
|
PF00069+10-253+Protein_kinase_domain
|
— |
PTHR44899+8-255+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-267
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.666
|
29945.610
|
7.721
|
8.000
|
29.588
|
11.985
|
47.191
|
52.809
|
17.603
|
11.985
|
43.820
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
magenta
|
265.575
|
434.328
|
123.669
|
119.557
|
211.632
|
285.032
|
1359.208
|
103.499
|
24.295
|
154.822
|
98.882
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.042
|
-1.999
|
— |
0.793
|
0.443
|
2.265
|
-1.573
|
3.862
|
— | — | — | — | — |
No JSON data available for plots.