Hg_chrom8_TN10mRNA_16234
Organism: Heterodera glycines Gene Locus: chr8:7717179-7720950 Feature type: polypeptideProtein Sequence
Length: 395
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.707 | 0.648 | 0.368 | 0.611 | 0.633 | 0.844 | 0.723 | 1.266 | 1.406 | 2.121 | 0.345 | 2.681 | 1.266 | 0.682 | 0.93 | 1.7 | 0.955 | 1.074 | 1.947 | 0.819 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15339
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — |
114-134
|
0.993
|
— | — | — | — |
0.022
|
— | — |
0.101
|
0.214
|
0.016
|
0.089
|
0.395
|
0.429
|
0.829
|
0.058
|
0.193
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012313
|
1.000
|
1.000
|
Hsc_gene_3761.t1
|
Hsc_gene_3761.t1
|
— |
Q9NQQ7.2 Solute carrier family 35 member C2 [Homo sapiens]
|
KAI1713937.1 triose-phosphate transporter family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.825|GO:0110165_0.825|GO:0016020_0.754|GO:0071944_0.725|GO:0005886_0.711|GO:0005622_0.686|GO:0008150_0.662|GO:0043226_0.634|GO:0009987_0.626|GO:0043229_0.625|GO:0005737_0.623|GO:0043227_0.595|GO:0043231_0.581|GO:0005773_0.547|GO:0012505_0.516
|
IPR004853+3-302+|IPR050186+5-304+
|
— |
PF03151+3-302+Triose-phosphate_Transporter_family
|
— |
PTHR11132+5-304+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
365-395
|
1.000
|
1-364
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.812
|
43995.780
|
8.377
|
9.000
|
15.190
|
12.405
|
38.987
|
61.013
|
9.367
|
5.823
|
47.089
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
tan
|
779.842
|
884.384
|
806.716
|
926.791
|
1000.449
|
1208.407
|
1743.581
|
614.785
|
660.579
|
221.959
|
409.939
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.361
|
— |
0.308
|
— |
0.288
|
0.539
|
-1.082
|
1.647
|
— | — | — | — | — |
No JSON data available for plots.