SCN Proteipedia

Hg_chrom8_TN10mRNA_16237

Organism: Heterodera glycines Gene Locus: chr8:7732150-7734693 Feature type: polypeptide

Protein Sequence

Length: 307

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.477	1.061	0.77	1.348	0.489	1.253	0.814	2.443	0.796	1.012	0.888	1.341	0.633	0.94	1.197	1.256	1.228	0.691	0.501	0.383	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15342	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.977

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKCMSSSTKKRLKLKVERR	—	—	30-81	0.992	—	—	0.000	—	—	0.930	0.096	0.011	0.212	0.043	0.041	0.045	0.096	0.045	0.047

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002519	2.000	2.000	Hsc_gene_16859.t1;Hsc_gene_3771.t1	Hsc_gene_16859.t1	—	Q9I8S2.1 mRNA cap guanine-N7 methyltransferase [Xenopus laevis]	KAI1693365.1 mRNA capping enzyme domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.849\|GO:0003674_0.744\|GO:0005575_0.730\|GO:0110165_0.722\|GO:0009987_0.716\|GO:0005488_0.676\|GO:0005622_0.673\|GO:0008152_0.647\|GO:0044237_0.638\|GO:0009058_0.633\|GO:0044238_0.633\|GO:0043170_0.626\|GO:0044249_0.619\|GO:0065007_0.613\|GO:0009059_0.612\|GO:0010467_0.612\|GO:0050789_0.605\|GO:0043226_0.603\|GO:0006139_0.600\|GO:0043229_0.597\|GO:0034654_0.594\|GO:0097159_0.585\|GO:0090304_0.581\|GO:0050794_0.580\|GO:0016070_0.579\|GO:0032774_0.579\|GO:0141187_0.579\|GO:0003676_0.558\|GO:0016020_0.548\|GO:0019222_0.538\|GO:0031323_0.538\|GO:0080090_0.529\|GO:0060255_0.521\|GO:0009889_0.511\|GO:0031326_0.511\|GO:0010556_0.503	IPR004971+44-125_66-125+\|IPR013087+234-256_234-262_236-257_263-285_263-290_265-285+\|IPR029063+48-126+\|IPR036236+232-266_256-297+\|IPR050329+7-296+	SM00355+234-256_263-285+	PF00096+263-285+Zinc_finger,_C2H2_type\|PF03291+44-125+mRNA_(guanine-N(7))-methyltransferase_domain	G3DSA:3.30.160.60:FF:001638+260-288+Zinc_finger_protein_668	PTHR19818+7-296+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-36;164-220	2.000	37-163;221-307	5e9w_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.849	32921.340	9.575	21.500	23.779	9.121	49.511	50.489	16.612	7.166	57.980

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	87.699	197.331	145.796	87.870	60.034	56.336	72.621	66.781	53.820	85.779	72.082

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.664	-1.304	-0.624	-0.581	—	—	—	—	—	—	—	—	—

No JSON data available for plots.

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