Hg_chrom8_TN10mRNA_16238
Organism: Heterodera glycines Gene Locus: chr8:7736037-7737597 Feature type: polypeptideProtein Sequence
Length: 248
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.313 | 0.563 | 1.246 | 0.139 | 1.546 | 1.034 | 1.104 | 1.613 | 1.075 | 1.308 | 0.183 | 2.846 | 0.448 | 0.62 | 0.905 | 0.864 | 0.925 | 1.466 | 0.31 | 0.474 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15343
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.449
|
0.233
|
0.033
|
0.561
|
0.089
|
0.179
|
0.138
|
0.014
|
0.283
|
0.401
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000555
|
5.000
|
2.000
|
Hsc_gene_12047.t1;Hsc_gene_20002.t1
|
— | — | — | — |
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR002110+81-110_81-113_82-108_115-145_120-210_149-178_149-181_182-211_182-214+|IPR036770+36-248_64-236+
|
SM00248+81-110_115-145_149-178_182-211+
|
PF12796+120-210+Ankyrin_repeats_(3_copies)|PF13606+82-108+Ankyrin_repeat
|
— |
PTHR24171+141-222+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4;200-248
|
1.000
|
5-199
|
4hll_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.935
|
26468.790
|
4.112
|
-22.000
|
25.000
|
6.855
|
43.145
|
56.855
|
8.871
|
16.129
|
54.839
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1103.040
|
7.383
|
11.116
|
47.385
|
128.476
|
3378.795
|
94.982
|
6637.496
|
2.056
|
959.645
|
549.250
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.548
|
2.199
|
1.407
|
4.731
|
-5.142
|
0.861
|
-5.979
|
— |
4.626
|
— | — | — |
No JSON data available for plots.