SCN Proteipedia

Hg_chrom8_TN10mRNA_16243

Organism: Heterodera glycines Gene Locus: chr8:7757394-7765855 Feature type: polypeptide

Protein Sequence

Length: 857

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.95	0.814	1.273	0.563	1.05	1.556	0.792	0.933	1.271	1.214	0.672	1.716	1.005	0.741	1.381	0.85	1.09	1.078	0.18	0.755	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15348	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-Not_Clustered	0.897

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRKR,RKAVDPTDDASRVRLR	—	—	—	—	—	—	0.000	—	—	0.887	0.055	0.022	0.392	0.076	0.049	0.036	0.063	0.037	0.026

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012315	1.000	1.000	Hsc_gene_16855.t1	Hsc_gene_16854.t1;Hsc_gene_16855.t1	—	Q95XQ8.1 DNA replication licensing factor mcm-4 [Caenorhabditis elegans]	KAF7638129.1 DNA helicase [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006260\|GO:0006270\|GO:0016887\|GO:0032508\|GO:0042555	GO:0008150_0.908\|GO:0005575_0.888\|GO:0110165_0.837\|GO:0009987_0.803\|GO:0005622_0.771\|GO:0016020_0.751\|GO:0008152_0.712\|GO:0043226_0.709\|GO:0044237_0.685\|GO:0044238_0.683\|GO:0043229_0.679\|GO:0009058_0.669\|GO:0043227_0.660\|GO:0043170_0.656\|GO:0044249_0.650\|GO:0043231_0.640\|GO:0006139_0.633\|GO:0009059_0.631\|GO:0071840_0.626\|GO:0016043_0.619\|GO:0034654_0.617\|GO:0090304_0.612\|GO:0141187_0.608\|GO:0006259_0.587\|GO:0032991_0.584\|GO:0071897_0.583\|GO:0006260_0.579\|GO:0006996_0.570\|GO:0005634_0.559\|GO:0006261_0.536	IPR001208+432-658_444-655_490-505_550-564_578-591_602-614_629-637+\|IPR003593+491-643+\|IPR008047+282-295_330-342_460-471_611-628_760-769+\|IPR012340+179-407_260-394+\|IPR018525+558-566+\|IPR027417+425-768_454-767+\|IPR027925+144-248+\|IPR031327+136-837_256-760+\|IPR033762+259-386+\|IPR041562+676-758+	SM00350+256-760+\|SM00382+491-643+	PF00493+432-658+MCM_P-loop_domain\|PF14551+144-248+MCM_N-terminal_domain\|PF17207+259-386+MCM_OB_domain\|PF17855+676-758+MCM_AAA-lid_domain	G3DSA:2.20.28.10:FF:000003+287-336+DNA_helicase\|G3DSA:3.40.50.300:FF:000217+425-765+DNA_helicase	PTHR11630+136-837+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-118	1.000	119-857	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.531	95295.240	5.506	-10.000	26.371	8.285	48.541	51.459	13.069	13.302	50.525

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	saddlebrown	1019.609	484.718	616.879	1624.373	2270.429	1164.334	2536.197	364.681	202.078	911.128	607.249

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	1.608	1.507	0.451	-0.949	1.134	-1.787	2.943	—	—	—	—	—

No JSON data available for plots.

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