Hg_chrom8_TN10mRNA_16244
Organism: Heterodera glycines Gene Locus: chr8:7770350-7771644 Feature type: polypeptideProtein Sequence
Length: 293
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.595 | 0.635 | 1.241 | 0.353 | 1.706 | 1.488 | 0.65 | 1.536 | 1.062 | 1.338 | 1.138 | 1.405 | 1.327 | 0.656 | 1.881 | 1.121 | 0.951 | 0.362 | 1.313 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15349
|
— | — |
1.556
|
2.000
|
3.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRFGARREQFRKRDM,ARRKRKEWRRESGRKGGST
|
— | — | — | — | — | — |
0.000
|
— | — |
0.784
|
0.250
|
0.038
|
0.352
|
0.139
|
0.037
|
0.039
|
0.017
|
0.040
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000146
|
12.000
|
1.000
|
Hsc_gene_23909.t1
|
Hsc_gene_12064.t1;Hsc_gene_19559.t1;Hsc_gene_22469.t1;Hsc_gene_5850.t1;Hsc_gene_787.t1;Hsc_gene_787.t2
|
— | — |
KAI1707339.1 hypothetical protein DdX_12435 [Ditylenchus destructor]
|
MDA3961641
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-86
|
1.000
|
87-293
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.574
|
34006.320
|
7.213
|
3.500
|
36.860
|
9.556
|
59.044
|
40.956
|
19.795
|
17.065
|
40.614
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
79.940
|
67.120
|
128.077
|
132.482
|
124.544
|
125.311
|
83.848
|
150.404
|
18.641
|
31.337
|
25.896
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.706
|
0.844
|
— | — | — |
-0.570
|
— |
-0.701
|
— | — | — | — | — |
No JSON data available for plots.