Hg_chrom8_TN10mRNA_16245
Organism: Heterodera glycines Gene Locus: chr8:7777386-7778728 Feature type: polypeptideProtein Sequence
Length: 219
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.637 | 1.168 | 0.747 | 1.575 | 0.609 | 0.585 | 0.978 | 1.826 | 1.015 | 0.494 | 0.484 | 1.612 | 1.142 | 1.405 | 2.796 | 0.978 | 0.973 | 0.969 | 2.107 | 0.537 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15350
|
— | — |
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
GARPRRKSVKRSCAR,RRPEQGQETPPKSRRAER
|
19-59
|
0.891
|
29-70
|
0.999
|
— | — |
0.000
|
— | — |
0.567
|
0.143
|
0.101
|
0.475
|
0.114
|
0.160
|
0.102
|
0.026
|
0.246
|
0.259
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000931
|
5.000
|
1.000
|
Hsc_gene_16852.t1
|
Hsc_gene_11031.t1;Hsc_gene_16852.t1;Hsc_gene_17665.t1;Hsc_gene_19599.t1;Hsc_gene_19603.t1;Hsc_gene_23212.t1
|
— | — | — |
TNV77249
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR001841+87-127_88-127+|IPR013083+61-135+
|
SM00184+88-127+
|
PF13639+87-127+Ring_finger_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-15
|
1.000
|
16-219
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.668
|
25054.630
|
11.039
|
24.000
|
28.311
|
12.329
|
48.402
|
51.598
|
20.548
|
7.763
|
53.881
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
157.734
|
8.133
|
49.121
|
24.759
|
51.562
|
55.609
|
25.832
|
286.256
|
17.367
|
489.083
|
286.919
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.359
|
1.466
|
-0.878
|
1.028
|
— |
-1.094
|
2.255
|
-3.325
|
— | — | — | — |
5.190
|
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