Hg_chrom8_TN10mRNA_16249
Organism: Heterodera glycines Gene Locus: chr8:7785907-7787289 Feature type: polypeptideProtein Sequence
Length: 150
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.93 | 1.395 | 0.97 | 0.46 | 0.778 | 1.026 | 0.397 | 0.667 | 1.333 | 1.081 | 0.606 | 1.961 | 1.111 | 1.667 | 2.177 | 0.476 | 1.639 | 0.606 | 1.026 | 0.784 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15354
|
— | — |
2.111
|
3.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
3.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.367
|
0.207
|
0.006
|
0.562
|
0.081
|
0.086
|
0.220
|
0.075
|
0.090
|
0.084
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001057
|
4.000
|
1.000
|
Hsc_gene_13995.t1
|
Hsc_gene_13995.t1;Hsc_gene_25501.t1
|
— |
P62837.1 Ubiquitin-conjugating enzyme E2 D2 [Homo sapiens]
|
XP_052941040.1 ubiquitin-conjugating enzyme E2-16 kDa [Mycotypha africana];KAI8991782.1 ubiquitin-conjugating enzyme E2-16 kDa [Mycotypha africana]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.833|GO:0003674_0.754|GO:0008152_0.687|GO:0044238_0.669|GO:0043170_0.657|GO:0003824_0.633|GO:0019538_0.613|GO:0016740_0.601|GO:0140096_0.588|GO:0016746_0.585|GO:0016755_0.580|GO:0019787_0.580|GO:0004842_0.578|GO:0005575_0.534|GO:0110165_0.516
|
IPR000608+1-150_4-145_5-144+|IPR016135+1-150_2-149+|IPR023313+76-91+|IPR050113+2-145+
|
SM00212+4-150+
|
PF00179+5-144+Ubiquitin-conjugating_enzyme
|
G3DSA:3.10.110.10:FF:000060+1-150+Ubiquitin_conjugating_enzyme_(UbcB)
|
PTHR24067+2-145+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-42
|
1.000
|
43-150
|
8iya_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.747
|
17274.840
|
10.308
|
8.000
|
26.000
|
9.333
|
49.333
|
50.667
|
16.000
|
10.000
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1209.949
|
1.080
|
6.365
|
10.088
|
42.244
|
1716.465
|
12.158
|
1696.620
|
0.000
|
3986.645
|
2278.083
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.331
|
3.093
|
— |
2.038
|
5.355
|
-7.133
|
— |
-6.982
|
-27.630
|
4.192
|
— | — | — |
No JSON data available for plots.