Hg_chrom8_TN10mRNA_16259
Organism: Heterodera glycines Gene Locus: chr8:7819225-7820799 Feature type: polypeptideProtein Sequence
Length: 299
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.089 | 0.856 | 1.277 | 0.346 | 1.338 | 0.858 | 1.035 | 1.338 | 1.412 | 1.175 | 0.203 | 2.754 | 0.557 | 0.515 | 1.024 | 1.003 | 1.042 | 1.368 | 0.257 | 0.787 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15363
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.393
|
0.163
|
0.010
|
0.503
|
0.166
|
0.194
|
0.096
|
0.006
|
0.267
|
0.537
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000555
|
5.000
|
2.000
|
Hsc_gene_12047.t1;Hsc_gene_20002.t1
|
— | — | — | — |
MDF1734049
|
0.450
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR002110+80-109_80-112_81-107_114-144_119-209_148-177_148-180_181-210_181-213+|IPR036770+38-274_64-235+
|
SM00248+80-109_114-144_148-177_181-210+
|
PF12796+119-209+Ankyrin_repeats_(3_copies)|PF13606+81-107+Ankyrin_repeat
|
— |
PTHR24161+118-210+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-299
|
4zfh_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.858
|
32312.410
|
4.192
|
-22.000
|
24.080
|
7.692
|
44.482
|
55.518
|
9.030
|
15.050
|
54.849
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1299.927
|
5.089
|
6.347
|
32.935
|
75.149
|
2864.562
|
51.080
|
4239.164
|
2.056
|
2957.768
|
1691.034
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.551
|
2.481
|
1.160
|
5.265
|
-5.800
|
— |
-6.229
|
-8.254
|
4.101
|
— | — | — |
No JSON data available for plots.