Hg_chrom8_TN10mRNA_16264
Organism: Heterodera glycines Gene Locus: chr8:7832776-7838816 Feature type: polypeptideProtein Sequence
Length: 866
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.074 | 1.611 | 0.357 | 0.557 | 0.366 | 3.997 | 1.086 | 3.349 | 0.385 | 0.593 | 0.122 | 2.853 | 0.481 | 1.577 | 0.471 | 1.617 | 0.852 | 0.63 | 0.355 | 0.442 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15367
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.650
|
0.127
|
0.008
|
0.600
|
0.098
|
0.116
|
0.072
|
0.016
|
0.261
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q95XA8.4 CREB-regulated transcription coactivator 1 homolog [Caenorhabditis elegans]
|
KAF7638132.1 TORC_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008140|GO:0051289
|
GO:0008150_0.974|GO:0005575_0.902|GO:0110165_0.897|GO:0003674_0.893|GO:0005488_0.883|GO:0032501_0.863|GO:0005515_0.817|GO:0016020_0.816|GO:0005622_0.815|GO:0043226_0.762|GO:0043229_0.752|GO:0043227_0.734|GO:0005634_0.721|GO:0043231_0.721|GO:0008134_0.676|GO:0140297_0.676|GO:0008340_0.670|GO:0005737_0.663|GO:0008140_0.650|GO:0005829_0.577
|
IPR024783+5-70+|IPR053019+42-136+
|
— |
PF12884+5-70+Transducer_of_regulated_CREB_activity,_N_terminus
|
— |
PTHR23353+42-136+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-866
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.945
|
92312.870
|
7.183
|
20.000
|
13.972
|
10.393
|
53.002
|
46.998
|
9.815
|
4.157
|
57.737
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
tan
|
1067.768
|
1665.071
|
1212.202
|
880.364
|
802.305
|
732.247
|
1240.719
|
818.406
|
1458.877
|
820.586
|
1094.139
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.687
|
-1.057
|
-0.353
|
-0.166
|
— |
0.770
|
— |
0.741
|
— | — | — | — | — |
No JSON data available for plots.