SCN Proteipedia

Hg_chrom8_TN10mRNA_16270

Organism: Heterodera glycines Gene Locus: chr8:7857358-7861824 Feature type: polypeptide

Protein Sequence

Length: 322

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.939	1.156	0.903	0.857	1.139	1.433	0.702	1.087	0.552	0.881	1.459	3.288	0.69	0.538	1.331	1.109	1.426	0.8	0.478	0.183	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15373	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.781

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKKIKDEKLAKRCKA	—	—	—	—	—	—	0.000	—	—	0.656	0.139	0.011	0.426	0.097	0.093	0.119	0.007	0.109	0.042

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002521	2.000	2.000	Hsc_gene_23209.t1;Hsc_gene_23209.t2	—	—	P52652.1 Putative transcription elongation factor S-II [Caenorhabditis elegans]	KIH63061.1 transcription elongation factor S-II [Ancylostoma duodenale]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0005634\|GO:0006351\|GO:0006368\|GO:0008270	GO:0005575_0.833\|GO:0110165_0.832\|GO:0005622_0.775\|GO:0016020_0.741\|GO:0043226_0.725\|GO:0008150_0.706\|GO:0043229_0.700\|GO:0043227_0.665\|GO:0009987_0.660\|GO:0043231_0.640\|GO:0005634_0.612\|GO:0065007_0.548\|GO:0008152_0.540\|GO:0043170_0.540\|GO:0050789_0.538\|GO:0009058_0.530\|GO:0009059_0.530\|GO:0010467_0.530\|GO:0044237_0.530\|GO:0044249_0.530\|GO:0050794_0.521\|GO:0006139_0.518\|GO:0044238_0.518\|GO:0034654_0.509\|GO:0090304_0.506\|GO:0141187_0.506\|GO:0016070_0.505\|GO:0032774_0.505	IPR001222+280-320_282-320_282-321_284-319+\|IPR003617+8-83+\|IPR003618+159-268_160-260_162-277+\|IPR006289+7-322+\|IPR017923+9-84_32-80+\|IPR035100+2-322+\|IPR035441+1-97_3-95+\|IPR036575+140-250_158-253+	SM00440+282-321+\|SM00509+8-83+\|SM00510+160-260+	PF01096+282-320+Transcription_factor_S-II_(TFIIS)\|PF07500+159-268+Transcription_factor_S-II_(TFIIS),_central_domain\|PF08711+32-80+TFIIS_helical_bundle-like_domain	G3DSA:2.20.25.10:FF:000001+251-322+Probable_Transcription_elongation_factor_S-II	PTHR11477+18-319+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	73-220	2.000	1-72;221-322	9eh1_S	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.768	35888.940	10.005	17.500	30.124	5.901	57.143	42.857	18.323	11.801	50.932

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	midnightblue	1135.696	2035.495	1329.737	1095.972	1345.390	1381.093	1404.256	1114.448	582.011	892.264	759.298

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.844	-1.030	-0.170	0.264	—	—	-0.416	0.477	—	—	—	—	—

No JSON data available for plots.

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