Hg_chrom8_TN10mRNA_16272
Organism: Heterodera glycines Gene Locus: chr8:7863170-7895800 Feature type: polypeptideProtein Sequence
Length: 2,491
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.727 | 0.831 | 0.555 | 0.318 | 0.522 | 2.429 | 0.879 | 1.144 | 0.571 | 0.797 | 0.76 | 0.992 | 0.446 | 1.112 | 1.36 | 1.698 | 1.329 | 0.699 | 0.371 | 0.295 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15374
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.926
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRRS,RKKK,KLGKKR,RRQRSGDATARKLKF,RRRRHNQQQQQQAKKKAP
|
43-63
|
0.982
|
7-28
|
0.999
|
— | — |
0.000
|
— | — |
0.285
|
0.198
|
0.048
|
0.678
|
0.113
|
0.081
|
0.113
|
0.103
|
0.557
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004834
|
1.000
|
2.000
|
Hsc_gene_23210.t2;Hsc_gene_23210.t3
|
— | — | — |
KAH7721999.1 Protein W05F2.4 a [Aphelenchus avenae]
|
No
|
-0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;74-752;935-2491
|
2.000
|
2-73;753-934
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.885
|
261335.850
|
11.108
|
165.500
|
20.153
|
5.379
|
53.191
|
46.809
|
13.970
|
6.182
|
60.177
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
4964.092
|
10505.133
|
11475.272
|
3147.483
|
2314.764
|
5600.187
|
1816.822
|
5297.781
|
3359.374
|
4139.331
|
3805.064
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.102
|
-1.876
|
-1.757
|
-0.476
|
1.290
|
-1.615
|
-0.185
|
-1.403
|
— | — | — | — | — |
No JSON data available for plots.