Hg_chrom8_TN10mRNA_16275
Organism: Heterodera glycines Gene Locus: chr8:7909658-7910492 Feature type: polypeptideProtein Sequence
Length: 130
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.342 | 0.716 | 0.28 | 0.265 | 0.256 | 1.578 | 1.099 | 2.692 | 1.197 | 1.559 | 0.583 | 1.357 | 0.855 | 1.923 | 1.57 | 1.099 | 0.757 | 0.466 | 0.0 | 0.452 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15377
|
— | — |
2.111
|
3.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
4.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
extracellular
|
— | — |
62-83
|
0.941
|
6-60
|
0.998
|
— | — |
0.000
|
— | — |
0.459
|
0.323
|
0.051
|
0.476
|
0.062
|
0.028
|
0.050
|
0.002
|
0.092
|
0.521
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000931
|
5.000
|
1.000
|
Hsc_gene_16852.t1
|
— | — | — | — |
MBQ9758875
|
0.400
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-130
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.787
|
13939.160
|
11.983
|
14.500
|
20.000
|
10.000
|
41.538
|
58.462
|
16.923
|
3.077
|
51.538
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
291.011
|
46.304
|
107.277
|
102.367
|
246.871
|
699.307
|
78.648
|
1000.957
|
64.787
|
368.932
|
238.584
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.982
|
1.008
|
— |
1.240
|
1.516
|
-3.143
|
— |
-3.524
|
— | — | — | — | — |
No JSON data available for plots.