Hg_chrom8_TN10mRNA_16278
Organism: Heterodera glycines Gene Locus: chr8:7926027-7928418 Feature type: polypeptideProtein Sequence
Length: 375
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.558 | 1.178 | 1.164 | 0.736 | 0.533 | 0.752 | 0.73 | 1.2 | 1.896 | 1.333 | 0.727 | 0.784 | 2.222 | 1.231 | 1.469 | 0.876 | 0.699 | 0.929 | 2.051 | 0.471 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15380
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— |
KKRRRPHKK,RRFDRIVDEHFKTRKWKL
|
3-35
|
0.977
|
— | — | — | — |
0.099
|
— | — |
0.405
|
0.538
|
0.099
|
0.381
|
0.376
|
0.123
|
0.127
|
0.039
|
0.180
|
0.139
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000021
|
31.000
|
9.000
|
Hsc_gene_12092.t1;Hsc_gene_13746.t1;Hsc_gene_1386.t1;Hsc_gene_16433.t1;Hsc_gene_20441.t1;Hsc_gene_20629.t1;Hsc_gene_23777.t1;Hsc_gene_2877.t1;Hsc_gene_7671.t1
|
— | — | — |
KAI3411116.1 hypothetical protein GPALN_003199 [Globodera pallida]
|
WP_152289150
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-375
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.860
|
43033.900
|
9.248
|
13.500
|
24.000
|
14.667
|
42.400
|
57.600
|
14.400
|
9.600
|
47.467
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
184.714
|
5.778
|
10.479
|
40.292
|
134.654
|
93.321
|
63.676
|
57.026
|
0.000
|
656.166
|
374.952
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.660
|
2.053
|
1.710
|
-0.515
|
-0.543
|
-0.822
|
— | — |
6.189
|
— | — | — |
No JSON data available for plots.