Hg_chrom8_TN10mRNA_16281
Organism: Heterodera glycines Gene Locus: chr8:7945638-7952189 Feature type: polypeptideProtein Sequence
Length: 434
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.911 | 1.125 | 0.503 | 0.477 | 0.883 | 1.595 | 0.795 | 1.152 | 0.973 | 1.152 | 0.768 | 2.169 | 1.216 | 0.886 | 1.834 | 1.152 | 0.982 | 0.698 | 1.063 | 0.881 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15383
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.857
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
chloroplast
|
KRRP,EKRKRRLKAKE
|
40-64
|
0.954
|
22-85
|
0.977
|
— |
0.791
|
0.000
|
3.000
|
— |
0.097
|
0.151
|
0.005
|
0.120
|
0.215
|
0.293
|
0.343
|
0.007
|
0.888
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004838
|
1.000
|
2.000
|
Hsc_gene_23159.t1;Hsc_gene_23219.t1
|
Hsc_gene_23159.t1;Hsc_gene_23159.t2;Hsc_gene_23217.t1;Hsc_gene_23219.t1
|
— |
P18871.2 Alpha-2A adrenergic receptor [Sus scrofa]
|
KAI1713890.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.960|GO:0065007_0.905|GO:0009987_0.900|GO:0050789_0.895|GO:0005575_0.863|GO:0110165_0.862|GO:0050794_0.848|GO:0003674_0.765|GO:0007154_0.750|GO:0023052_0.749|GO:0050896_0.730|GO:0005622_0.710|GO:0051716_0.687|GO:0016020_0.660|GO:0007165_0.653|GO:0010646_0.625|GO:0023051_0.623|GO:0048519_0.618|GO:0038023_0.603|GO:0060089_0.603|GO:0007186_0.579|GO:0048523_0.575|GO:0005886_0.568|GO:0071944_0.568|GO:0032501_0.541|GO:0048583_0.517|GO:0004888_0.510
|
IPR000276+1-401_38-61_347-371_383-409+|IPR017452+1-401+
|
— |
PF00001+1-401+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24248+1-417+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
74-294
|
2.000
|
1-73;295-434
|
9cbm_R
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.757
|
49269.400
|
10.609
|
31.000
|
24.424
|
11.060
|
49.539
|
50.461
|
16.359
|
8.065
|
46.774
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
261.828
|
78.912
|
395.030
|
116.126
|
42.930
|
119.188
|
153.613
|
625.848
|
278.774
|
362.051
|
326.361
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.094
|
0.420
|
-1.657
|
-1.468
|
1.487
|
0.376
|
2.292
|
-1.885
|
— | — | — | — | — |