Hg_chrom8_TN10mRNA_16285
Organism: Heterodera glycines Gene Locus: chr8:7958257-7960633 Feature type: polypeptideProtein Sequence
Length: 109
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.96 | 1.067 | 0.5 | 0.949 | 0.459 | 1.176 | 0.218 | 3.211 | 1.427 | 1.364 | 0.278 | 1.079 | 2.548 | 1.059 | 2.06 | 0.786 | 0.451 | 0.973 | 1.411 | 1.349 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15387
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — |
13-35
|
0.937
|
— | — | — | — |
0.000
|
— | — |
0.137
|
0.326
|
0.004
|
0.202
|
0.114
|
0.208
|
0.424
|
0.016
|
0.600
|
0.199
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012317
|
1.000
|
1.000
|
Hsc_gene_23159.t2
|
Hsc_gene_23159.t1;Hsc_gene_23159.t2;Hsc_gene_23219.t1
|
— |
Q60474.2 Alpha-2A adrenergic receptor [Cavia porcellus]
|
KAI1717828.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.919|GO:0065007_0.835|GO:0009987_0.833|GO:0050789_0.825|GO:0005575_0.800|GO:0110165_0.786|GO:0050794_0.773|GO:0003674_0.750|GO:0050896_0.726|GO:0007154_0.705|GO:0023052_0.705|GO:0051716_0.674|GO:0007165_0.642|GO:0005622_0.622|GO:0038023_0.613|GO:0060089_0.613|GO:0007186_0.605|GO:0010646_0.562|GO:0023051_0.561|GO:0048519_0.559|GO:0016020_0.520|GO:0004888_0.502|GO:0004930_0.502
|
— | — | — | — |
PTHR24248+40-92+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-109
|
9pqd_R
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.502
|
13021.170
|
10.153
|
10.500
|
23.853
|
22.018
|
41.284
|
58.716
|
18.349
|
5.505
|
40.367
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
24.550
|
3.975
|
5.709
|
3.273
|
2.584
|
3.982
|
13.704
|
26.272
|
0.000
|
85.094
|
48.625
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
1.794
|
2.616
|
-0.796
|
— | — | — | — | — |
No JSON data available for plots.