SCN Proteipedia

Hg_chrom8_TN10mRNA_16286

Organism: Heterodera glycines Gene Locus: chr8:7964044-7966534 Feature type: polypeptide

Protein Sequence

Length: 294

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.542	1.345	1.175	1.056	1.134	1.047	0.607	1.02	0.68	1.471	0.464	2.001	0.85	0.785	1.319	0.972	0.39	1.185	0.785	0.4	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15388	—	—	0.889	1.000	1.000	1.000	—	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-Not_Clustered	0.920

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.408	0.076	0.011	0.725	0.098	0.030	0.356	0.102	0.078	0.110

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012318	1.000	1.000	Hsc_gene_23220.t1	Hsc_gene_23220.t1	—	—	KAH7727069.1 hsp70-binding protein 1-like protein [Aphelenchus avenae]	No	0.030

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.934\|GO:0009987_0.867\|GO:0003674_0.859\|GO:0005575_0.856\|GO:0110165_0.852\|GO:0065007_0.796\|GO:0008152_0.794\|GO:0005488_0.786\|GO:0050789_0.784\|GO:0044237_0.763\|GO:0044238_0.761\|GO:0005515_0.753\|GO:0009058_0.745\|GO:0043170_0.736\|GO:0019538_0.730\|GO:0044249_0.727\|GO:0048518_0.718\|GO:0009059_0.714\|GO:0019222_0.708\|GO:0010467_0.705\|GO:0009056_0.704\|GO:0060255_0.700\|GO:0043412_0.698\|GO:0080090_0.698\|GO:0036211_0.695\|GO:0009893_0.693\|GO:0010604_0.688\|GO:0009057_0.687\|GO:0051246_0.687\|GO:0009894_0.681\|GO:0006508_0.679\|GO:0051604_0.679\|GO:0030163_0.678\|GO:0043687_0.678\|GO:0032446_0.677\|GO:0070647_0.677\|GO:0016567_0.676\|GO:0019899_0.676\|GO:0031399_0.676\|GO:0051247_0.676\|GO:0006457_0.675\|GO:0042176_0.674\|GO:0051603_0.674\|GO:0010498_0.673\|GO:0006511_0.670\|GO:0009896_0.670\|GO:0019941_0.670\|GO:0030162_0.670\|GO:0031396_0.670\|GO:0031398_0.670\|GO:0031401_0.670\|GO:0032434_0.670\|GO:0032436_0.670\|GO:0043161_0.670\|GO:0043632_0.670\|GO:0045732_0.670\|GO:0045862_0.670\|GO:0061136_0.670\|GO:1901800_0.670\|GO:1901873_0.670\|GO:1901875_0.670\|GO:1903050_0.670\|GO:1903052_0.670\|GO:1903320_0.670\|GO:1903322_0.670\|GO:2000058_0.670\|GO:2000060_0.670\|GO:0098772_0.668\|GO:0030234_0.660\|GO:0031625_0.654\|GO:0044389_0.654\|GO:0140678_0.654\|GO:0004857_0.650\|GO:0140313_0.650\|GO:0005576_0.602\|GO:0005615_0.581	IPR011989+68-249+\|IPR016024+74-220+\|IPR050693+26-259+	—	—	—	PTHR19316+26-259+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-60	1.000	61-294	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.584	32146.560	4.836	-8.000	24.830	7.483	43.878	56.122	11.565	13.265	54.762

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	turquoise	686.659	361.749	464.179	584.165	701.300	538.615	533.836	370.457	227.216	1500.856	955.010

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.554	0.440	0.231	-0.366	—	-0.646	0.670	—	—	—	—	—

No JSON data available for plots.

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