SCN Proteipedia

Hg_chrom8_TN10mRNA_16289

Organism: Heterodera glycines Gene Locus: chr8:7977073-7979849 Feature type: polypeptide

Protein Sequence

Length: 325

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.823	0.501	1.622	0.318	2.154	0.631	0.989	2.462	0.821	0.915	1.119	0.724	0.684	0.769	2.009	0.791	0.555	0.746	0.71	0.633	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15391	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRKINDEKLAKRCKA,KRCKALISRADEDRRERDR,DRRERDRGRERREQHHHHHHEHHHEHRRKSGRRGGGEGEPPP	—	—	—	—	—	—	0.000	—	—	0.837	0.039	0.005	0.246	0.074	0.056	0.068	0.000	0.059	0.112

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002378	3.000	1.000	Hsc_gene_23223.t1	Hsc_gene_23209.t1;Hsc_gene_23209.t2	—	Q8BIZ6.1 Smad nuclear-interacting protein 1 [Mus musculus]	KAI1713888.1 FHA domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0005634	GO:0005575_0.891\|GO:0110165_0.886\|GO:0005622_0.866\|GO:0008150_0.852\|GO:0043226_0.821\|GO:0016020_0.811\|GO:0043229_0.811\|GO:0009987_0.801\|GO:0043227_0.752\|GO:0008152_0.750\|GO:0005634_0.743\|GO:0043231_0.743\|GO:0065007_0.733\|GO:0009058_0.732\|GO:0043170_0.729\|GO:0009059_0.723\|GO:0010467_0.723\|GO:0044237_0.723\|GO:0044249_0.723\|GO:0003674_0.718\|GO:0050789_0.718\|GO:0050794_0.705\|GO:0005488_0.691\|GO:0019222_0.652\|GO:0031323_0.644\|GO:0060255_0.637\|GO:0009889_0.626\|GO:0010468_0.626\|GO:0010556_0.626\|GO:0031326_0.626\|GO:0044238_0.573\|GO:0006139_0.556\|GO:0048519_0.534\|GO:0034654_0.531\|GO:0090304_0.531\|GO:0141187_0.531\|GO:0048523_0.524\|GO:0016070_0.523\|GO:0032774_0.523	IPR000253+219-257+\|IPR003617+8-77+\|IPR008984+173-248+\|IPR017923+9-84_32-76+\|IPR035441+1-91_3-75+\|IPR050923+80-246+	SM00509+8-77+	PF00498+219-257+FHA_domain\|PF08711+32-76+TFIIS_helical_bundle-like_domain	—	PTHR23308+80-246+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-183;279-325	1.000	184-278	8i0r_X	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.705	37133.950	5.736	-7.000	44.000	10.462	57.538	42.462	22.154	21.846	45.231

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	403.693	1148.716	574.787	460.082	438.563	341.644	361.415	346.233	234.730	213.322	222.497

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.230	-1.457	-0.211	—	-0.345	—	—	—	—	—	—	—	—

No JSON data available for plots.

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