Hg_chrom8_TN10mRNA_16290
Organism: Heterodera glycines Gene Locus: chr8:7980763-7982864 Feature type: polypeptideProtein Sequence
Length: 244
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.715 | 0.858 | 0.894 | 0.141 | 0.615 | 1.471 | 0.732 | 0.82 | 0.546 | 1.828 | 0.559 | 3.375 | 1.48 | 1.261 | 1.255 | 0.761 | 0.873 | 1.242 | 2.837 | 0.482 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15392
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RRWLLCDEQHGQLVKRQDK
|
54-75
|
0.937
|
— | — | — | — |
0.000
|
— | — |
0.129
|
0.418
|
0.011
|
0.115
|
0.892
|
0.369
|
0.256
|
0.188
|
0.106
|
0.016
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012320
|
1.000
|
1.000
|
Hsc_gene_23224.t1
|
Hsc_gene_23224.t1
|
— |
Q7SXW4.1 ER membrane protein complex subunit 3 [Danio rerio]
|
KAF7639301.1 ER membrane protein complex subunit 3 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.946|GO:0005575_0.905|GO:0110165_0.902|GO:0005622_0.796|GO:0005737_0.758|GO:0016020_0.755|GO:0071944_0.692|GO:0009987_0.683|GO:0005886_0.681|GO:0043226_0.650|GO:0043229_0.640|GO:0043227_0.634|GO:0043231_0.628|GO:0051179_0.561|GO:0051234_0.557|GO:0005773_0.544|GO:0012505_0.528|GO:0071840_0.513|GO:0016043_0.512
|
IPR002809+11-197_11-198+|IPR008568+7-242_10-241+
|
SM01415+11-198+
|
PF01956+11-197+Integral_membrane_protein_EMC3/TMCO1-like
|
— |
PTHR13116+10-241+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-244
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.753
|
27926.660
|
9.445
|
5.000
|
20.082
|
12.295
|
40.164
|
59.836
|
11.475
|
8.607
|
46.721
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
1100.554
|
1225.638
|
1241.302
|
970.931
|
1111.584
|
1253.595
|
1509.778
|
1251.697
|
366.237
|
1328.550
|
916.130
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.211
|
-0.473
|
-0.246
|
0.163
|
0.188
|
0.279
|
— |
0.414
|
-1.990
|
1.585
|
— | — | — |
No JSON data available for plots.