Hg_chrom8_TN10mRNA_16291
Organism: Heterodera glycines Gene Locus: chr8:7983404-7986896 Feature type: polypeptideProtein Sequence
Length: 322
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.939 | 0.794 | 1.355 | 1.071 | 0.828 | 0.717 | 1.183 | 1.242 | 0.897 | 1.175 | 0.753 | 1.279 | 1.294 | 0.657 | 1.077 | 1.02 | 1.018 | 1.082 | 0.717 | 0.913 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15393
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.718
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.186
|
0.209
|
0.046
|
0.327
|
0.332
|
0.572
|
0.514
|
0.041
|
0.402
|
0.141
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012321
|
1.000
|
1.000
|
Hsc_gene_23225.t1
|
— | — |
Q86YS6.1 Ras-related protein Rab-43 [Homo sapiens]
|
KAI1715397.1 ras family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.934|GO:0110165_0.933|GO:0008150_0.773|GO:0016020_0.764|GO:0071944_0.731|GO:0005886_0.720|GO:0005622_0.704|GO:0043226_0.667|GO:0009987_0.634|GO:0005737_0.633|GO:0043229_0.630|GO:0043227_0.577|GO:0043231_0.528|GO:0005773_0.513
|
IPR001806+66-322_72-273_73-276+|IPR005225+69-189+|IPR027417+64-284_67-277+|IPR050305+64-276+
|
SM00173+68-276+|SM00174+73-276+|SM00175+71-276+
|
PF00071+72-273+Ras_family
|
G3DSA:3.40.50.300:FF:001447+61-205+Ras-related_protein_Rab-1B
|
PTHR47980+64-276+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-322
|
2hup_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.610
|
35091.670
|
5.860
|
-3.000
|
25.155
|
11.180
|
44.720
|
55.280
|
12.733
|
12.422
|
55.901
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
1109.166
|
1083.381
|
831.701
|
943.714
|
1025.946
|
1259.631
|
1400.677
|
1009.433
|
171.762
|
1890.850
|
1154.098
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.611
|
-0.336
|
0.291
|
— |
0.311
|
— |
-0.426
|
0.616
|
-3.582
|
— | — | — | — |
No JSON data available for plots.