Hg_chrom8_TN10mRNA_16293
Organism: Heterodera glycines Gene Locus: chr8:7994421-7995444 Feature type: polypeptideProtein Sequence
Length: 128
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 1.09 | 1.42 | 0.269 | 1.823 | 0.2 | 0.744 | 1.172 | 1.042 | 1.795 | 1.302 | 1.379 | 1.736 | 0.901 | 0.797 | 0.558 | 0.512 | 0.947 | 0.601 | 0.689 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15395
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.522
|
0.225
|
0.056
|
0.520
|
0.088
|
0.357
|
0.178
|
0.080
|
0.096
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004839
|
1.000
|
2.000
|
Hsc_gene_23228.t1;Hsc_gene_23228.t2
|
Hsc_gene_23228.t1;Hsc_gene_23228.t2;Hsc_gene_23228.t3
|
— |
Q9DCG9.1 Multifunctional methyltransferase subunit TRM112-like protein [Mus musculus]
|
KAH7727337.1 methyltransferase-associated protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046982
|
GO:0008150_0.812|GO:0005575_0.637|GO:0110165_0.631|GO:0005622_0.596|GO:0005737_0.582|GO:0009987_0.571|GO:0008152_0.537|GO:0016020_0.536|GO:0043226_0.521|GO:0043229_0.511|GO:0044238_0.509
|
IPR005651+2-116+|IPR039127+1-127+
|
— |
PF03966+2-116+Trm112p-like_protein
|
— |
PTHR12773+1-127+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-128
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.808
|
14584.700
|
4.608
|
-6.500
|
33.594
|
11.719
|
46.094
|
53.906
|
14.844
|
18.750
|
43.750
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
midnightblue
|
879.673
|
537.915
|
521.401
|
672.725
|
877.825
|
600.218
|
839.379
|
524.075
|
278.568
|
1924.566
|
1219.138
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.276
|
0.186
|
0.478
|
0.352
|
-0.533
|
0.494
|
-0.301
|
0.822
|
-2.910
|
— | — | — | — |
No JSON data available for plots.