Hg_chrom8_TN10mRNA_16297
Organism: Heterodera glycines Gene Locus: chr8:8001548-8014719 Feature type: polypeptideProtein Sequence
Length: 1,496
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.119 | 0.715 | 0.899 | 0.738 | 0.813 | 1.748 | 0.851 | 1.939 | 0.832 | 1.617 | 0.476 | 1.651 | 1.021 | 0.823 | 1.282 | 0.993 | 0.811 | 0.972 | 0.72 | 0.688 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15399
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RLNKRYK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.561
|
0.117
|
0.011
|
0.414
|
0.114
|
0.388
|
0.188
|
0.015
|
0.126
|
0.179
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012323
|
1.000
|
1.000
|
Hsc_gene_23229.t1
|
Hsc_gene_23229.t1
|
— |
O75694.1 Nuclear pore complex protein Nup155 [Homo sapiens]
|
KAF7639309.1 Nucleoporin_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005643|GO:0006913|GO:0017056
|
GO:0005575_0.919|GO:0110165_0.912|GO:0016020_0.844|GO:0071944_0.823|GO:0005886_0.818|GO:0005622_0.812|GO:0043226_0.758|GO:0008150_0.740|GO:0043229_0.732|GO:0009987_0.704|GO:0043227_0.704|GO:0005737_0.680|GO:0043231_0.674|GO:0005634_0.602|GO:0005773_0.589|GO:0012505_0.585|GO:0005635_0.520|GO:0031967_0.520
|
IPR004870+57-1450+|IPR007187+701-1434+|IPR014908+64-394+|IPR042533+901-1130+|IPR042537+1132-1211+|IPR042538+1220-1456+
|
— |
PF03177+701-1434+Non-repetitive/WGA-negative_nucleoporin_C-terminal|PF08801+64-394+Nup133_N_terminal_like
|
— |
PTHR10350+57-1450+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
628-705;1469-1496
|
2.000
|
1-627;706-1468
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
165363.960
|
7.283
|
23.000
|
23.128
|
10.829
|
44.920
|
55.080
|
13.302
|
9.826
|
49.532
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
2670.811
|
3088.403
|
1487.668
|
2843.273
|
3343.865
|
2123.391
|
3602.964
|
924.524
|
1420.968
|
4088.789
|
2945.437
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.282
|
-0.256
|
1.042
|
0.202
|
-0.640
|
0.772
|
-1.306
|
2.104
|
— | — | — | — | — |
No JSON data available for plots.