SCN Proteipedia

Hg_chrom8_TN10mRNA_16307

Organism: Heterodera glycines Gene Locus: chr8:8048849-8054529 Feature type: polypeptide

Protein Sequence

Length: 1,006

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.786	1.063	1.066	0.48	1.143	1.249	0.675	1.69	1.127	1.29	0.723	1.228	1.215	1.09	1.339	0.966	0.766	1.024	1.071	0.877	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15408	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	6-pJ2_J3_J4_Male	0.986

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	—	1-24	0.997	—	—	—	—	0.000	—	—	0.191	0.896	0.004	0.283	0.068	0.110	0.053	0.014	0.084	0.013

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004837	2.000	1.000	Hsc_gene_23236.t1	Hsc_gene_23236.t1	—	Q623T0.1 2-oxoglutarate dehydrogenase, mitochondrial [Caenorhabditis briggsae]	KAH7729651.1 oxoglutarate dehydrogenase-like isoform 1 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016624\|GO:0030976	GO:0005575_0.774\|GO:0110165_0.774\|GO:0008150_0.697\|GO:0005622_0.690\|GO:0009987_0.645\|GO:0016020_0.642\|GO:0005737_0.605\|GO:0043226_0.590\|GO:0043229_0.582\|GO:0043227_0.541\|GO:0003674_0.523\|GO:0043231_0.522	IPR001017+242-561+\|IPR005475+631-846_631-847+\|IPR011603+22-999_29-998_37-996+\|IPR029061+152-577_621-854+\|IPR031717+851-996+\|IPR032106+33-71+\|IPR042179+762-994+	SM00861+631-847+	PF00676+242-561+Dehydrogenase_E1_component\|PF02779+631-846+Transketolase,_pyrimidine_binding_domain\|PF16078+33-71+2-oxoglutarate_dehydrogenase_N-terminus\|PF16870+851-996+2-oxoglutarate_dehydrogenase_C-terminal	G3DSA:3.40.50.11610:FF:000003+859-998+2-oxoglutarate_dehydrogenase,_isoform_X4\|G3DSA:3.40.50.12470:FF:000007+588-862+2-oxoglutarate_dehydrogenase_e1_mitochondrial\|G3DSA:3.40.50.970:FF:000002+202-568+2-oxoglutarate_dehydrogenase,_E1_component	PTHR23152+29-998+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	76-121;1006-1006	2.000	1-75;122-1005	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.619	114214.620	6.653	3.000	27.435	12.127	48.310	51.690	14.712	12.724	48.111

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	brown	3443.537	2683.315	4331.616	4005.027	5507.560	6076.366	4047.145	4195.153	1829.713	2125.869	1998.945

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.463	0.441	—	0.428	—	-0.576	-0.640	—	—	—	1.605	—	—

No JSON data available for plots.

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